View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_10 (Length: 429)
Name: NF3253_low_10
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 41866267 - 41866123
Alignment:
| Q |
13 |
aaaataccataactgcttgcaataccatccttgtacgtttgaattttactcttttccattctatccaatgtgaaatcaatttgtgtatctttttatctct |
112 |
Q |
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| T |
41866267 |
aaaataccataactgcttgcaataccatccctgtacgtttgaattttactcttttccattctatccaatgtgaaaacagtttgtgtatctttttatctct |
41866168 |
T |
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| Q |
113 |
ctattgctaccaccattttgcttctgttctaagccattatttcat |
157 |
Q |
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| T |
41866167 |
ctattgctaccaccattttgcttctgttctaagccattatttcat |
41866123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 41866083 - 41865961
Alignment:
| Q |
151 |
atttcattctttatttttcttcatattttataagccttactagccttatttgaactttgtggcaaatactcattgatttgaatacttcaacaattttttg |
250 |
Q |
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| T |
41866083 |
atttcattctttatttttcttcatattttattagccttattagccttatttgaactttgtggcaaatactcattgatttgaatacttcaacaattttttg |
41865984 |
T |
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| Q |
251 |
ttgactttacaacttcatatata |
273 |
Q |
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| T |
41865983 |
ttgactttacaacttcatatata |
41865961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 41865282 - 41865199
Alignment:
| Q |
272 |
taatttatgcattggtaattttaattttagttaatttcaatctgaattgatgcattaaaaatatgtgtaatcaagccattatta |
355 |
Q |
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| T |
41865282 |
taatttatgcacttgtaattttaatttgagttaatttcaatctgagttaatgcattagaaatatgcgtaatcaagccattatta |
41865199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 41865106 - 41865072
Alignment:
| Q |
373 |
ttgagcagtattttgatagtcgagatttacattga |
407 |
Q |
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| T |
41865106 |
ttgagcagtgttttgatagtcgagatttacattga |
41865072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 53005127 - 53005231
Alignment:
| Q |
251 |
ttgactttacaacttcatatataatttatgcattggtaattttaattttagttaatttcaatctgaattgatgcattaaaaatatgtgtaatcaagccat |
350 |
Q |
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||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||| || || |||||| || |||||||||||||||||| |
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| T |
53005127 |
ttgactttaaaatttcatatacaatttttgcattggtaattttaatttgagttaatttcaatcggagttattgcattggaattatgtgtaatcaagccat |
53005226 |
T |
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| Q |
351 |
tatta |
355 |
Q |
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||||| |
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| T |
53005227 |
tatta |
53005231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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