View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_12 (Length: 398)
Name: NF3253_low_12
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 11592414 - 11592777
Alignment:
| Q |
16 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592414 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11592513 |
T |
|
| Q |
116 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11592514 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11592613 |
T |
|
| Q |
216 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11592614 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11592713 |
T |
|
| Q |
316 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaact |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592714 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaact |
11592777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 11645705 - 11645342
Alignment:
| Q |
16 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645705 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11645606 |
T |
|
| Q |
116 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11645605 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11645506 |
T |
|
| Q |
216 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11645505 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11645406 |
T |
|
| Q |
316 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaact |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645405 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaact |
11645342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 158 - 380
Target Start/End: Complemental strand, 37181056 - 37180835
Alignment:
| Q |
158 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
256 |
Q |
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|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
257 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
355 |
Q |
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| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
356 |
acatcatttgctttatcataaactt |
380 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
37180859 |
acatcattagctttatcataaactt |
37180835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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