View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3253_low_13 (Length: 393)
Name: NF3253_low_13
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 40 - 350
Target Start/End: Complemental strand, 40093094 - 40092781
Alignment:
| Q |
40 |
tgaaactattctaaaaggcctggctaaaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093094 |
tgaaactattctaaaaggcctggctaaaagaacagcctccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
40092995 |
T |
|
| Q |
140 |
ttggtgagaacaaattcatttccaacaaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgatacca |
239 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092994 |
ttggtgagagcaaattcaattccaacaaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgatacca |
40092895 |
T |
|
| Q |
240 |
gctattagtagtactcactggctctaatggaggggacccttcaacactgtctttgtttgatatatttttcattgtaagagaa---ggaacactgtcattg |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
40092894 |
gctattagtagtactcactggctctaatggaggggacacttcaacactgtctttgtttgtgaagtttttcattggaagggaaggtggaacactgtcattg |
40092795 |
T |
|
| Q |
337 |
gcagtggtttggtt |
350 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
40092794 |
gcaatggtatggtt |
40092781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 66 - 350
Target Start/End: Complemental strand, 40125540 - 40125253
Alignment:
| Q |
66 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
40125540 |
aaagagcagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaac |
40125441 |
T |
|
| Q |
166 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctcta |
265 |
Q |
| |
|
|||| ||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40125440 |
aaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctcta |
40125341 |
T |
|
| Q |
266 |
atggaggggacccttcaacactgtctttgtttgatatatttttcattgtaagagaa---ggaacactgtcattggcagtggtttggtt |
350 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | |||||||||| ||| ||| |||||||||||||||||| |||| ||||| |
|
|
| T |
40125340 |
atggaggggacacttcaacagtgtctttgtttgtgaagtttttcattggaagggaaggtggaacactgtcattggcaatggtatggtt |
40125253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 66 - 327
Target Start/End: Complemental strand, 40121888 - 40121627
Alignment:
| Q |
66 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40121888 |
aaagaacagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
40121789 |
T |
|
| Q |
166 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggct |
262 |
Q |
| |
|
|||| |||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||| |
|
|
| T |
40121788 |
aaactaggtgttattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggca |
40121692 |
T |
|
| Q |
263 |
ctaatggaggggacccttcaacactgtctttgtttgatatatttttcattgtaagagaaggaaca |
327 |
Q |
| |
|
||||||||| |||| |||||||| ||||| || |||||| ||||||||||| ||||||||||||| |
|
|
| T |
40121691 |
ctaatggagaggacacttcaacattgtctctgcttgatagatttttcattggaagagaaggaaca |
40121627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University