View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_16 (Length: 351)
Name: NF3253_low_16
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 37287626 - 37287968
Alignment:
| Q |
1 |
ttcggaatcaaggctacttgaatcgtctcttggcagcttacgacatccagaagtccaaattgttggtacacttgaagacaatagagatttcaactttggc |
100 |
Q |
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| T |
37287626 |
ttcggaatcaaggctacttgaatcgtctcttggtagcttacgacctccagaagtccaaattgttggtacacttgaagacaatagagatttcaactttggc |
37287725 |
T |
|
| Q |
101 |
aagtcagtcatgctatttgcacgctgtttcaagtgttcgaattctccatccttcatcctcgccaaggtttcctttagactagtaatctgttccttcagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37287726 |
aagtcagtcatgctatttgcacgctgtttcaagtgttcgaattctccatccttcatcctcgccaaggtttcctttagactagtaatctgttccttcagca |
37287825 |
T |
|
| Q |
201 |
ctttcacttcgccgctatctttattaacccgtgaagcaccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37287826 |
ctttcacttcgccgctatctttattaacccgtgaagcaccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagc |
37287925 |
T |
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| Q |
301 |
ttctgactcggggctaatatgaacaaacatgagcgtctctgct |
343 |
Q |
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| T |
37287926 |
ttctgactcggggctaatatgaacaaacatgagcgtctttgct |
37287968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 46217879 - 46217780
Alignment:
| Q |
239 |
ccaagttcaacagtggagactctctcggcaaacttcagtgtactaattgtttctgcaagagcttctgactcggggctaatatgaacaaacatgagcgtct |
338 |
Q |
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|||||||||||||||||||||| ||||| ||||| |||||||||| ||||||| | ||||| || | || || |||||||||||||||||||| |||| |
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| T |
46217879 |
ccaagttcaacagtggagactcgttcggcgaacttgagtgtactaagtgtttctccgagagcatcaggttccggactaatatgaacaaacatgagagtct |
46217780 |
T |
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