View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_18 (Length: 324)
Name: NF3253_low_18
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 23630239 - 23630543
Alignment:
| Q |
8 |
gagcgttgttcatttcttcggcggacttttagtgattatttaggataggtannnnnnnnnnnnnnnnnnnnngatgtagttccgtttgtggcggctcctc |
107 |
Q |
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| T |
23630239 |
gagcgttgttcatttcttaggcggacttttagtgattatttaggatagggattttgttttccttttctttatgatgtagttccgtt-gtggcggcttctc |
23630337 |
T |
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| Q |
108 |
ttgtaattgatttgaatgtttgaaagaaaagaagcctgaatgtctttcttttacctttgtttgttgtttttgatgtgccgcccgagcttttcctttacct |
207 |
Q |
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| T |
23630338 |
ttgtaattgatttgaatgtttgaatgaaaagaagattgaatgtctttctcttacctttgtttgttatttttgttgtgccgcccgagcttttcctttctct |
23630437 |
T |
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| Q |
208 |
ctgcatccactcattttatttcatgccacgttttttattgtgcgcacattttatctcatgccacacattttatatatggttactatattttattttggta |
307 |
Q |
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| T |
23630438 |
ctgcatccactcattttatttcatgccacgttttttattgtccgcgcattttatttcatgccacgcattttatatatggttactatattttattttggta |
23630537 |
T |
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| Q |
308 |
attcat |
313 |
Q |
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|||||| |
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| T |
23630538 |
attcat |
23630543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 4780022 - 4779845
Alignment:
| Q |
94 |
tgtggcggctcctcttgtaattgatttgaatgtttgaaagaaaagaagcctgaatgtctttcttttacctttgtttgttgtttttgatgtgccgcccgag |
193 |
Q |
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| T |
4780022 |
tgtgtcggctcctcttgtaattgttttgaatgtttgaatgaaaagaagtttgaatgcctttctctttcctttgttttttgtttttgttgtgccgcacgag |
4779923 |
T |
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| Q |
194 |
cttttcctttacctctgcatccactcattttatttcatgccacgttttttattgtgcgcacattttatctcatgccac |
271 |
Q |
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| T |
4779922 |
cttttcctttccctctatatcggcgcattttatttcatgccagagattttattgtccgcgcattttatttcatcccac |
4779845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 4812448 - 4812276
Alignment:
| Q |
99 |
cggctcctcttgtaattgatttgaatgtttgaaagaaaagaagcctgaatgtctttcttttacctttgtttgttgtttttgatgtgccgcccgagctttt |
198 |
Q |
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| T |
4812448 |
cggctcctcttgtaattgttttgaatgtttgaatgaaaagaagtttgaatgcctttctctttcctttgttttttgtttttgttgtgccgcacgagctttt |
4812349 |
T |
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| Q |
199 |
cctttacctctgcatccactcattttatttcatgccacgttttttattgtgcgcacattttatctcatgccac |
271 |
Q |
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| T |
4812348 |
cctttccctctatatcggcgcattttatttcatgccagagattttattgtccgcgcattttatttcatcccac |
4812276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 18801254 - 18801427
Alignment:
| Q |
98 |
gcggctcctcttgtaattgatttgaatgtttgaaagaaaagaagcctgaatgtctttcttttacctttgtttgttgtttttgatgtgccgcccgagcttt |
197 |
Q |
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| T |
18801254 |
gcggctcctcttgtaagtgatttgaatgtttgaatgagaagaagcatgagagcctttttctttccttcgtt-gtcgttgttgttgtgccacccaagcttt |
18801352 |
T |
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| Q |
198 |
tcctttacctctgcatccactcattttatttcatgccacgttttttattgtgcgcacattttatctcatgccaca |
272 |
Q |
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| T |
18801353 |
tcctttccctttgtatccatgcattttattttatgccacgttttggattgttcgcacaatttatttcatgccaca |
18801427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18801157 - 18801212
Alignment:
| Q |
1 |
agcaaccgagcgttgttcatttcttcggcggacttttagtgattatttaggatagg |
56 |
Q |
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| T |
18801157 |
agcaaccgagcgttgttcatttcttcgacggccccttagtgattgtttaggttagg |
18801212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 25093438 - 25093481
Alignment:
| Q |
97 |
ggcggctcctcttgtaattgatttgaatgtttgaaagaaaagaa |
140 |
Q |
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| T |
25093438 |
ggcggcccctcttgtaattgatttgaatgtttgaatgaaaagaa |
25093481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 25416858 - 25416814
Alignment:
| Q |
97 |
ggcggctcctcttgtaattgatttgaatgtttgaaagaaaagaag |
141 |
Q |
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| T |
25416858 |
ggcggttcctcttgtaattgatttgaacgttttaatgaaaagaag |
25416814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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