View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_19 (Length: 302)
Name: NF3253_low_19
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 36281537 - 36281249
Alignment:
| Q |
1 |
tggttttggttcttgcttcattcaggtctatatttgagttcattgaaaattaattagtcaaagggtgtttatgctttgttaaaaatgattcaactactaa |
100 |
Q |
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| T |
36281537 |
tggttttggttcttgcttcattcaggtctatatttgagttcattgaaaattaattagtcaaagggtgtttatgctttgttaaaaatgattcaactactaa |
36281438 |
T |
|
| Q |
101 |
tggatttggcaattttctatgttttaatttgtcactttattttatatgactctgaaatttgaagcttctttgtcttattttgtaggcaacaatttatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36281437 |
tggatttggcaattttctatgttttaatttgtcactttattttatatgactctgaaatttgaagtttctttgtcttattttgtaggcaacaatttatttg |
36281338 |
T |
|
| Q |
201 |
attcttgcaattggtttcttcgttaatttcattgcctttgctgtcacaagacgtcattgctttctctatttggctgtttccttcattat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36281337 |
attcttgcaattggtttcttcgttaatttcattgcctttgctgtcacaagacgtcattgctttctctatttggctgtttccttcattat |
36281249 |
T |
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