View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_20 (Length: 300)
Name: NF3253_low_20
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 86 - 282
Target Start/End: Original strand, 35681513 - 35681709
Alignment:
| Q |
86 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
185 |
Q |
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| T |
35681513 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttctttgggttgaagaactcacttttttcatattttttaacagttcatagtatatat |
35681612 |
T |
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| Q |
186 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
282 |
Q |
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| T |
35681613 |
gtttgaactctaaaagcaatcgcttctagtttattcctagtagattacacacactcttattttaatttgtatggaagatcatctagtcccctctgtg |
35681709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35681273 - 35681324
Alignment:
| Q |
1 |
ctggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
52 |
Q |
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| T |
35681273 |
ctggaaggaaacactcgtgtttaaattgtgtatgttgtgggagagttgaagt |
35681324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 6272038 - 6271852
Alignment:
| Q |
86 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
185 |
Q |
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| T |
6272038 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatatat |
6271939 |
T |
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| Q |
186 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
282 |
Q |
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| T |
6271938 |
gtttgaactctaaatgttattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagagcatctagtcacctctgtg |
6271852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 86 - 282
Target Start/End: Original strand, 9824988 - 9825174
Alignment:
| Q |
86 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatat |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9824988 |
atgttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatataa |
9825087 |
T |
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| Q |
186 |
gtttgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
282 |
Q |
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| T |
9825088 |
gtttgaactctaaatgttattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
9825174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 6262595 - 6262412
Alignment:
| Q |
89 |
ttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatatttgttaacagttgatagtatatatgtt |
188 |
Q |
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| T |
6262595 |
ttactgatgcaaaaactgaaatcaaaatgcatccttttacttcttctggctgaagaactcacttttttcatattttttaacagttgatagtatatatgtt |
6262496 |
T |
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| Q |
189 |
tgaactctaaatgttattccttctagtttattcttagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
282 |
Q |
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| T |
6262495 |
tgaactctaaatggtattgc----------ttcgtagtagattacacacactcttattttaatttgtatggaagatcatctagtcacctctgtg |
6262412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9824903 - 9824954
Alignment:
| Q |
1 |
ctggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9824903 |
ctggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
9824954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6262682 - 6262631
Alignment:
| Q |
1 |
ctggaaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
52 |
Q |
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| T |
6262682 |
ctggaaggaagcactcatgtttaaaatgtgtttgttttgggagagttgaagt |
6262631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 6272123 - 6272076
Alignment:
| Q |
5 |
aaggaaacactcatgtttaaaatgtgtttgttgtgggagagttgaagt |
52 |
Q |
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| T |
6272123 |
aaggaaacactcatgtttaaaatgtgtttgttctgggagagttgaagt |
6272076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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