View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_23 (Length: 262)
Name: NF3253_low_23
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 9680545 - 9680779
Alignment:
| Q |
13 |
gagatccatgtcttgagtgagccatttggtacatactcaaagacaataaagattcttctgacatttgaatcatctaaataatgttcaaagcaatgtccaa |
112 |
Q |
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| T |
9680545 |
gagatccatgtcttgagtgagccatttggtacatactcaaagacaataaagattcttctgacatttgaatcatctaaataatgttcaaagcaatgtccaa |
9680644 |
T |
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| Q |
113 |
gaacactgactaaatgttgatgcctgaattttgatatcatttctatgtgctgcatgaaatctctagtcctgcagcttttggtcaattttacacttctaat |
212 |
Q |
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| T |
9680645 |
gaacactgactaaatgttgatgcctgaattttgatatcatttctatgtgctgcatgaaatctctagtcctgcagcttttggtcaattttacacttctaat |
9680744 |
T |
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| Q |
213 |
ggcaactagtgaaccctcctttagttgtcctctat |
247 |
Q |
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| T |
9680745 |
ggcaactagtgaaccctcctttagttgtcctctat |
9680779 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 33545651 - 33545513
Alignment:
| Q |
34 |
ccatttggtacatactcaaagacaataaagattcttctgacatttgaatcatctaaataatgttcaaagcaatgtccaagaacactgactaaatgttgat |
133 |
Q |
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| T |
33545651 |
ccatttggtacatattcaaagacaagaaatattttgctgacacttgaatcttctaaagaacatttgaagcagtgaccaagagcgctgactaaatggcgat |
33545552 |
T |
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| Q |
134 |
gcctgaattttgatatcatttctatgtgctgcatgaaat |
172 |
Q |
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| T |
33545551 |
gcctaagtttcgatataagctccatgtggtgcatgaaat |
33545513 |
T |
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