View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3253_low_24 (Length: 255)
Name: NF3253_low_24
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_24 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 49698446 - 49698694
Alignment:
| Q |
7 |
gagatgaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctagtgttgcatggtgattaatcatataatgattg |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49698446 |
gagaagaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctggtgttgcatggtgattaatcatataatgattg |
49698545 |
T |
|
| Q |
107 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49698546 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatg |
49698645 |
T |
|
| Q |
207 |
atgtatgaaagccacaacgatgatgatgccttagatcatgagagaaata |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49698646 |
atgtatgaaagccacaacgatgatgatgccttagatcatgagagaaata |
49698694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University