View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3253_low_32 (Length: 241)

Name: NF3253_low_32
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3253_low_32
NF3253_low_32
[»] chr7 (5 HSPs)
chr7 (1-231)||(96730-96960)
chr7 (71-150)||(44124579-44124658)
chr7 (114-149)||(30592688-30592723)
chr7 (54-124)||(28613161-28613231)
chr7 (71-120)||(47881508-47881557)
[»] chr8 (3 HSPs)
chr8 (55-132)||(34862969-34863046)
chr8 (100-150)||(27483099-27483149)
chr8 (90-148)||(39550992-39551050)
[»] chr5 (6 HSPs)
chr5 (79-148)||(22214960-22215029)
chr5 (90-148)||(7430168-7430226)
chr5 (79-150)||(6586566-6586637)
chr5 (71-143)||(5090794-5090866)
chr5 (55-122)||(13898736-13898803)
chr5 (77-126)||(9634888-9634937)
[»] chr2 (2 HSPs)
chr2 (71-147)||(27318025-27318101)
chr2 (55-114)||(10547131-10547190)
[»] chr1 (9 HSPs)
chr1 (72-148)||(6025905-6025981)
chr1 (71-146)||(17472872-17472947)
chr1 (91-148)||(52444955-52445012)
chr1 (72-120)||(19392278-19392326)
chr1 (77-135)||(7600418-7600476)
chr1 (79-147)||(4068311-4068379)
chr1 (71-126)||(14443972-14444027)
chr1 (81-134)||(17797578-17797631)
chr1 (58-122)||(3596263-3596327)
[»] chr6 (5 HSPs)
chr6 (79-148)||(33532433-33532502)
chr6 (82-122)||(31694669-31694709)
chr6 (90-124)||(19263170-19263204)
chr6 (97-150)||(431029-431082)
chr6 (61-150)||(1912430-1912519)
[»] chr4 (6 HSPs)
chr4 (90-135)||(8721877-8721922)
chr4 (91-148)||(34581629-34581686)
chr4 (79-119)||(4762190-4762230)
chr4 (60-124)||(43188018-43188082)
chr4 (97-148)||(37585832-37585883)
chr4 (90-123)||(26930497-26930530)
[»] chr3 (5 HSPs)
chr3 (74-139)||(27858857-27858922)
chr3 (64-148)||(50251482-50251566)
chr3 (79-150)||(38884018-38884089)
chr3 (83-133)||(43307573-43307623)
chr3 (77-134)||(50930522-50930579)
[»] scaffold0940 (1 HSPs)
scaffold0940 (71-148)||(2096-2173)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 96730 - 96960
Alignment:
Q  1 attataggaaacctgaaaaggctagtatggctccaatttgataaatggataaggcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96730 attataggaaacctgaaaaggctagtatggctccaatttgataaatggataaggcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaat 96829  T
Q  101 tccgctacgcaatagtgctatagcgctactatagccgctgtttgacaatagcgatttgtccaaattcagctatattatagccgtagcgccacctatagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  96830 tccgctacgcaatagtgctatagcgctactatagccgctgtttgacaatagcgatttgtccaaattccgctatattatagccgtagcgccacctatagat 96929  T
Q  201 actgtttaacaacactgggagaaagtgatga 231  Q
    |||||||||||||||||||||||||||||||    
T  96930 actgtttaacaacactgggagaaagtgatga 96960  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 44124658 - 44124579
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    ||||||| ||||||||| ||||||||||||||| || |||||||| ||||||||||  ||||| | ||| ||||||||||    
T  44124658 ggatagcggaaaatagcatattgttaaaattccactgcgcaatagggctatagcgccgctatatcagctatttgacaata 44124579  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 30592688 - 30592723
Alignment:
Q  114 agtgctatagcgctactatagccgctgtttgacaat 149  Q
    |||||||||||||||||||||| |||||||||||||    
T  30592688 agtgctatagcgctactatagctgctgtttgacaat 30592723  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 28613161 - 28613231
Alignment:
Q  54 gcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagc 124  Q
    ||||| |||||||||  ||||||  |||||| ||  |||||||||||||||||| |||| |||||||||||    
T  28613161 gcaatgttgtcaatcgcggatagtggaaaatggcagattgttaaaattccgctatgcaacagtgctatagc 28613231  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 47881557 - 47881508
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 120  Q
    ||||||||||||| |||| |||||||||||||| ||| ||||||| ||||    
T  47881557 ggatagcagaaaaaagcggattgttaaaattcctctatgcaatagggcta 47881508  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 34863046 - 34862969
Alignment:
Q  55 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactat 132  Q
    |||| |||||||||||||||||||||||| |||  |||||||||||||||||  ||||||||| ||||| ||||||||    
T  34863046 caatgttgtcaatcaaggatagcagaaaacagcagattgttaaaattccgctctgcaatagtgttatagtgctactat 34862969  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 27483149 - 27483099
Alignment:
Q  100 ttccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    |||||||  ||||||||||||||| || |||||||||||| ||||||||||    
T  27483149 ttccgctgtgcaatagtgctatagtgccactatagccgctatttgacaata 27483099  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 39551050 - 39550992
Alignment:
Q  90 attgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    ||||||||||| | |||||||||| | ||||||| || |||||||||||| ||||||||    
T  39551050 attgttaaaatcctgctacgcaattgggctatagtgccactatagccgctatttgacaa 39550992  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 22215029 - 22214960
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||| || ||| ||||||||    
T  22215029 gaaaatagcggattgttaaaattccgctacgcaatagtgctataactctactattgcagctatttgacaa 22214960  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 7430226 - 7430168
Alignment:
Q  90 attgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    ||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||    
T  7430226 attgttaaaattccgctacacagtagtgttatagcgctacaatagccgctatttgacaa 7430168  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6586637 - 6586566
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    ||||||||||  ||||| ||||||| ||| |||||||| ||||||||  |||||| ||||||||||||||||    
T  6586637 gaaaatagcggtttgttcaaattcctctatgcaatagttctatagcggcactataaccgctgtttgacaata 6586566  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 5090794 - 5090866
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgttt 143  Q
    |||||||||||| ||| |  ||||||||||| || ||||||| || |||||||| ||| ||||||||||||||    
T  5090794 ggatagcagaaagtagtgatttgttaaaatttcgatacgcaagagggctatagctctattatagccgctgttt 5090866  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 13898803 - 13898736
Alignment:
Q  55 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctata 122  Q
    |||| |||||||||| ||||||  |||||||| |  |||||||||||||||||| ||| |||||||||    
T  13898803 caatgttgtcaatcacggatagtggaaaatagtgggttgttaaaattccgctacacaacagtgctata 13898736  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 9634888 - 9634937
Alignment:
Q  77 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgc 126  Q
    ||||||||||||  ||||| |||||||||||||||| | |||||||||||    
T  9634888 cagaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgc 9634937  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 27318101 - 27318025
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgaca 147  Q
    |||||||||||| |||| ||||||| ||||||||||| ||||||||  |||||||| |||||||||||| |||||||    
T  27318101 ggatagcagaaagtagcatattgtttaaattccgctaggcaatagttatatagcgccactatagccgctatttgaca 27318025  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 10547131 - 10547190
Alignment:
Q  55 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaata 114  Q
    |||| ||||||||||  ||||||||||||||||  |||||| ||||||||||||||||||    
T  10547131 caatgttgtcaatcacagatagcagaaaatagctaattgttcaaattccgctacgcaata 10547190  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 6025905 - 6025981
Alignment:
Q  72 gatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    ||||||||||||||| | ||||||||||||| ||| | ||| |||||||||||||| |||||||| || ||||||||    
T  6025905 gatagcagaaaatagtggattgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaa 6025981  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 17472947 - 17472872
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgac 146  Q
    |||||||||||||||||| |||||||||| ||| ||| |||||||| ||||| ||||||| ||||| || ||||||    
T  17472947 ggatagcagaaaatagcgcattgttaaaactcctctatgcaatagttctatatcgctactttagccactatttgac 17472872  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 52444955 - 52445012
Alignment:
Q  91 ttgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  52444955 ttgttaaaattctgctatgcaatggtgctatagcgctactatagcagctatttgacaa 52445012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 19392326 - 19392278
Alignment:
Q  72 gatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 120  Q
    |||||||| |||||||||||||||||||||||||| | |||||||||||    
T  19392326 gatagcagtaaatagcgtattgttaaaattccgctgcacaatagtgcta 19392278  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 7600418 - 7600476
Alignment:
Q  77 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagc 135  Q
    |||||||||| || ||||| |||||| ||||| ||||||||||||||||| ||||||||    
T  7600418 cagaaaatagtgttttgttcaaattctgctacacaatagtgctatagcgccactatagc 7600476  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 4068379 - 4068311
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgaca 147  Q
    |||||||| | | |||||||||| ||||| |||||||||||| ||||||||| |||| ||| |||||||    
T  4068379 gaaaatagtggagtgttaaaatttcgctatgcaatagtgctacagcgctactttagcagctatttgaca 4068311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 14444027 - 14443972
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgc 126  Q
    ||||||||||||| |||| ||| |||||||||| ||| ||||||||| ||||||||    
T  14444027 ggatagcagaaaacagcggattattaaaattccactatgcaatagtgttatagcgc 14443972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 17797631 - 17797578
Alignment:
Q  81 aaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatag 134  Q
    |||||||||||||||  |||| ||||| ||||||| |||||||||| |||||||    
T  17797631 aaatagcgtattgtttgaattacgctatgcaatagcgctatagcgccactatag 17797578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 3596263 - 3596327
Alignment:
Q  58 tattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctata 122  Q
    ||||||||||   |||| |||||||||||||  ||||| ||||||  ||||||||||||||||||    
T  3596263 tattgtcaattttggatcgcagaaaatagcgatttgtttaaattcaactacgcaatagtgctata 3596327  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 33532433 - 33532502
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    ||||||||||  ||||| |||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  33532433 gaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaa 33532502  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 31694669 - 31694709
Alignment:
Q  82 aatagcgtattgttaaaattccgctacgcaatagtgctata 122  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  31694669 aatagcggatttttaaaattccgctacgcaatagtgctata 31694709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 19263170 - 19263204
Alignment:
Q  90 attgttaaaattccgctacgcaatagtgctatagc 124  Q
    |||||||||||||||||| ||||||||||||||||    
T  19263170 attgttaaaattccgctatgcaatagtgctatagc 19263204  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 431082 - 431029
Alignment:
Q  97 aaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    |||||| ||||||||| |||||||||||||  ||||||||||| ||| ||||||    
T  431082 aaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaata 431029  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 1912430 - 1912519
Alignment:
Q  61 tgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    ||||||| | |||| || |||||||| |  ||||| ||||||||||| ||||  |||||||||||  ||||||| |||| ||||||||||    
T  1912430 tgtcaattacggatcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaata 1912519  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 8721877 - 8721922
Alignment:
Q  90 attgttaaaattccgctacgcaatagtgctatagcgctactatagc 135  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||    
T  8721877 attgttaaaattccgctacgcaatagtgccatagcgacactatagc 8721922  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 34581686 - 34581629
Alignment:
Q  91 ttgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    ||||| |||||| | |||| || |||||||||||||||||||||||||| ||||||||    
T  34581686 ttgtttaaattctgatacgtaacagtgctatagcgctactatagccgctatttgacaa 34581629  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 4762230 - 4762190
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgct 119  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  4762230 gaaaatagtgaattgttaaaattccgctacgcaatagtgct 4762190  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 43188018 - 43188082
Alignment:
Q  60 ttgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagc 124  Q
    ||||||||| || ||| |||||||||| | ||| ||||||||||| ||| |||||||||||||||    
T  43188018 ttgtcaatcgagaataacagaaaatagtggatttttaaaattccgatacacaatagtgctatagc 43188082  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 37585832 - 37585883
Alignment:
Q  97 aaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    |||||||||||||||||||||||||||| | || ||||| ||| ||||||||    
T  37585832 aaattccgctacgcaatagtgctatagccccaccatagcggctatttgacaa 37585883  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 26930497 - 26930530
Alignment:
Q  90 attgttaaaattccgctacgcaatagtgctatag 123  Q
    |||||||||||||||||| |||||||||||||||    
T  26930497 attgttaaaattccgctatgcaatagtgctatag 26930530  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 27858922 - 27858857
Alignment:
Q  74 tagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgct 139  Q
    |||| |||||||| | ||||||||||||| ||||| || |||||||||||| | ||||||||||||    
T  27858922 tagctgaaaatagaggattgttaaaattctgctacacagtagtgctatagcaccactatagccgct 27858857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 50251482 - 50251566
Alignment:
Q  64 caatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    |||||| ||||||| |||||||||| | ||| ||||||||||||| ||||| |||| ||||||   |||||| ||| ||||||||    
T  50251482 caatcatggatagcggaaaatagcggactgtcaaaattccgctacacaataatgctttagcgccgttatagcagctatttgacaa 50251566  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 38884018 - 38884089
Alignment:
Q  79 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 150  Q
    |||||||||| | |||||||||||| ||  |||||||||||||||| | |||||| || || ||||||||||    
T  38884018 gaaaatagcggactgttaaaattcctctgtgcaatagtgctatagcaccactatacccactatttgacaata 38884089  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 43307573 - 43307623
Alignment:
Q  83 atagcgtattgttaaaattccgctacgcaatagtgctatagcgctactata 133  Q
    |||||| |||||||||| | |||||| ||||||||||||||||| ||||||    
T  43307573 atagcggattgttaaaacttcgctactcaatagtgctatagcgccactata 43307623  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 50930522 - 50930579
Alignment:
Q  77 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatag 134  Q
    ||||| |||||  ||||||||||||| ||||| |||||| |||||||||| |||||||    
T  50930522 cagaacatagcagattgttaaaattctgctacacaatagcgctatagcgccactatag 50930579  T

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Target: scaffold0940 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 2173 - 2096
Alignment:
Q  71 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 148  Q
    |||||| ||||||||||  |||||||||| ||| ||| ||||||||||||| |||  || ||||| ||| ||||||||    
T  2173 ggatagtagaaaatagcagattgttaaaagtcctctatgcaatagtgctatggcgtcaccatagcagctatttgacaa 2096  T

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