View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_34 (Length: 240)
Name: NF3253_low_34
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48043464 - 48043679
Alignment:
| Q |
1 |
tttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttc |
100 |
Q |
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| T |
48043464 |
tttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttc |
48043563 |
T |
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| Q |
101 |
agtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactactta |
200 |
Q |
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| T |
48043564 |
agtcccctgctcatgtgaaacaacatcatatgaatg--------gagcacatcctgaaaaaaagcaaattttttgaaatcaaaggatcacacactactta |
48043655 |
T |
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| Q |
201 |
aatcttttttgtcaggtcttgctt |
224 |
Q |
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| T |
48043656 |
aatcttttttgtcaggtcttgctt |
48043679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 48051481 - 48051652
Alignment:
| Q |
52 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
151 |
Q |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
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| Q |
152 |
tcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgctt |
224 |
Q |
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| T |
48051581 |
tcctgattaaaagctaa-aatttgaaatcataggatcacacactacttaaaccttttctgtcaggtcttgctt |
48051652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 48056683 - 48056836
Alignment:
| Q |
2 |
ttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttca |
101 |
Q |
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||||||||||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| |||||||||| |
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| T |
48056683 |
ttagaatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttca |
48056782 |
T |
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| Q |
102 |
gtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctg |
156 |
Q |
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| T |
48056783 |
gtctccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctg |
48056836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 48051422 - 48051480
Alignment:
| Q |
29 |
actgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
87 |
Q |
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| T |
48051422 |
actgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 48037416 - 48037528
Alignment:
| Q |
1 |
tttagaatgttttacaaaccgacaaattactgagtcaat----gttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattga |
96 |
Q |
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||||||||| |||||||| | || ||| ||||||||||| |||| || ||||||||||||||||||||| | |||||||||| || ||||||| || |
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| T |
48037416 |
tttagaatgctttacaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatgga |
48037515 |
T |
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| Q |
97 |
tttcagtcccctg |
109 |
Q |
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|| |||||||||| |
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| T |
48037516 |
ttccagtcccctg |
48037528 |
T |
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