View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3253_low_36 (Length: 237)

Name: NF3253_low_36
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3253_low_36
NF3253_low_36
[»] chr5 (6 HSPs)
chr5 (1-221)||(36574244-36574465)
chr5 (12-138)||(1817908-1818034)
chr5 (20-138)||(11478966-11479084)
chr5 (25-138)||(1817740-1817853)
chr5 (12-148)||(23218068-23218203)
chr5 (11-123)||(27348196-27348308)
[»] chr3 (11 HSPs)
chr3 (12-138)||(30229072-30229196)
chr3 (20-119)||(48086119-48086218)
chr3 (51-138)||(48085935-48086022)
chr3 (65-133)||(27663384-27663452)
chr3 (31-137)||(25239800-25239906)
chr3 (20-66)||(25157808-25157854)
chr3 (20-67)||(17075563-17075610)
chr3 (100-143)||(13330377-13330420)
chr3 (15-65)||(8694099-8694149)
chr3 (15-65)||(9045986-9046036)
chr3 (96-138)||(25157748-25157790)
[»] chr2 (5 HSPs)
chr2 (27-148)||(31627200-31627321)
chr2 (12-67)||(9193775-9193830)
chr2 (12-62)||(27757127-27757177)
chr2 (96-148)||(27757053-27757104)
chr2 (100-148)||(37939723-37939771)
[»] chr7 (3 HSPs)
chr7 (17-115)||(31011102-31011200)
chr7 (20-67)||(2413300-2413347)
chr7 (20-58)||(9654078-9654116)
[»] chr8 (4 HSPs)
chr8 (24-138)||(6798588-6798702)
chr8 (97-143)||(28838364-28838410)
chr8 (97-134)||(6298134-6298171)
chr8 (12-44)||(9090318-9090350)
[»] chr4 (7 HSPs)
chr4 (25-138)||(41969422-41969535)
chr4 (12-137)||(42132083-42132208)
chr4 (26-138)||(41969253-41969366)
chr4 (20-58)||(13525103-13525141)
chr4 (93-138)||(29905818-29905863)
chr4 (97-134)||(35425633-35425670)
chr4 (20-60)||(34980990-34981030)
[»] chr6 (1 HSPs)
chr6 (12-108)||(701445-701541)
[»] chr1 (2 HSPs)
chr1 (20-59)||(12024291-12024330)
chr1 (26-67)||(26792986-26793027)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36574465 - 36574244
Alignment:
Q  1 aaattagttagaa-ttgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgttta 99  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  36574465 aaattagttagaaattgtactttagatgttgattaaagtaagtttcactcaaatgtggtagtttagagattaaaatcacataatgaactcgtaatgttta 36574366  T
Q  100 tgttgaactataggtgtttgataagatgtctcaatgaaagtttgattgannnnnnnattgttttatgtttgtgaagatatgcctgacagaccaaacaaac 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||    
T  36574365 tgttgaactatagatgtttgataagatgtctcaatgaaagtttgattgattttttcattgttttatgtttgtgaagatatgtctgacagaccaaacaaac 36574266  T
Q  200 agagacttggcaaggagatgat 221  Q
    ||||||||||||||||||||||    
T  36574265 agagacttggcaaggagatgat 36574244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 1818034 - 1817908
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactata 111  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||  |||||| ||||| |||||||||||||||||| ||    
T  1818034 aattgtactttagatgttgattattgtaagtttcattcaaatgtggtagtttagagattgaaatggcacaatgaactcataatgtttatgttgaactcta 1817935  T
Q  112 ggtgtttgataagatgtctcaatgaaa 138  Q
    ||||| |||||| || |||||||||||    
T  1817934 ggtgtatgataaaatatctcaatgaaa 1817908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 11479084 - 11478966
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttg 119  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||| ||||||| ||||| ||||||| |||||||||| |||||||||     
T  11479084 tttagatgttgattagagtaagtttgactcaaatgtgatagtttatagattgaaatgacacaatgaactcataatgttaatgttgaactctaggtgttta 11478985  T
Q  120 ataagatgtctcaatgaaa 138  Q
     ||| ||||||||||||||    
T  11478984 gtaaaatgtctcaatgaaa 11478966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 1817853 - 1817740
Alignment:
Q  25 atgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataag 124  Q
    |||||||||||||| ||||| | |  |||||| ||||||||||||| |||| |||||||  |||| |||||||||||||||||| ||| ||||||||||     
T  1817853 atgttgattagagtgagtttgagtgcaatgtgatagtttagagattcaaatgacacaatgtactcataatgtttatgttgaactctagatgtttgataaa 1817754  T
Q  125 atgtctcaatgaaa 138  Q
    |||||| |||||||    
T  1817753 atgtcttaatgaaa 1817740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 23218203 - 23218068
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactata 111  Q
    ||||| ||||| |||||||||||||||||||||||||| | | |||||||||||||||| |||| ||||||| ||||| |||| |  |  |||||||  |    
T  23218203 aattggactttggatgttgattagagtaagtttcactccagtatggtagtttagagattgaaataacacaatgaactcataatatagagattgaactcca 23218104  T
Q  112 ggtgtttgataagatgtctcaatgaaagtttgattga 148  Q
     ||||||||||| ||||||||||||||  ||||||||    
T  23218103 agtgtttgataa-atgtctcaatgaaaaattgattga 23218068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 27348308 - 27348196
Alignment:
Q  11 gaattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactat 110  Q
    ||||| || ||||| ||||| |||||||||||||  |||||||||||||||||| || | |||||   ||||| | ||| || |||| ||| || ||| |    
T  27348308 gaattatagtttaggtgttgtttagagtaagtttggctcaaatgtggtagtttatagttgaaaattggacaatgagctcatagtgttaatgatgcactct 27348209  T
Q  111 aggtgtttgataa 123  Q
    |||||||||||||    
T  27348208 aggtgtttgataa 27348196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 30229196 - 30229072
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactata 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||| || |||||| |||||||| |     
T  30229196 aattatactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagatggaaatgacacaatgaactcatattgtttaggttgaactct- 30229098  T
Q  112 ggtgtttgataagatgtctcaatgaaa 138  Q
     ||||||||||| ||||||||||||||    
T  30229097 -gtgtttgataaaatgtctcaatgaaa 30229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 48086218 - 48086119
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttg 119  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||| |||| || |||||||||| |||| ||||||||||||| ||||||||||    
T  48086218 tttagatgttgattagagtaagtttcactccagtatggtagtttagagattgaaatgacgcaataaactcataatatttatgttgaactctaggtgtttg 48086119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 48086022 - 48085935
Alignment:
Q  51 aatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataagatgtctcaatgaaa 138  Q
    ||||||||| |||||||||| |||| |||||||  ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  48086022 aatgtggtaatttagagattgaaatgacacaatgtactcgtaatttttatgttgaactctaggtgtttgataaaatgtctcaatgaaa 48085935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 27663452 - 27663384
Alignment:
Q  65 gagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataagatgtctcaa 133  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  27663452 gagattgaaatgacacaataaactcataatgtttatgttgaactttaggtgtttgataaaatgtctcaa 27663384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 25239800 - 25239906
Alignment:
Q  31 attagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataagatgtct 130  Q
    |||||||||||||| | |  |||||||||||||||||||| |||| ||||||| ||||| |||| | | |||||||||  | ||||||||||| ||||||    
T  25239800 attagagtaagtttgagtgcaatgtggtagtttagagattgaaataacacaatgaactcataatatatttgttgaactccaagtgtttgataaaatgtct 25239899  T
Q  131 caatgaa 137  Q
    |||||||    
T  25239900 caatgaa 25239906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 25157854 - 25157808
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtagtttaga 66  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  25157854 tttagatgttgattagagtaagtttgactcaaatgtggtaggttaga 25157808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 17075563 - 17075610
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtagtttagag 67  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  17075563 tttacatgttgattagagtaggtttgactcaaatgtggtagtttagag 17075610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 13330377 - 13330420
Alignment:
Q  100 tgttgaactataggtgtttgataagatgtctcaatgaaagtttg 143  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  13330377 tgttgaactctaggtgtttgataaaatgtctcaatgaaaatttg 13330420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 8694149 - 8694099
Alignment:
Q  15 tgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttag 65  Q
    |||| ||||||||||| ||||||||||||| |||| ||| |||||||||||    
T  8694149 tgtagtttagatgttgtttagagtaagttttactccaatatggtagtttag 8694099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 9046036 - 9045986
Alignment:
Q  15 tgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttag 65  Q
    |||| ||||||||||| ||||||||||||| |||| ||| |||||||||||    
T  9046036 tgtagtttagatgttgtttagagtaagttttactccaatatggtagtttag 9045986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 25157790 - 25157748
Alignment:
Q  96 tttatgttgaactataggtgtttgataagatgtctcaatgaaa 138  Q
    ||||||||||||| |||||||||||||| |||||| |||||||    
T  25157790 tttatgttgaactctaggtgtttgataaaatgtctaaatgaaa 25157748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 31627200 - 31627321
Alignment:
Q  27 gttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataagat 126  Q
    ||||| |||||||||||| | |  |||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||| |||||||||||||| |     
T  31627200 gttgaatagagtaagtttgagtgtaatgtggtagtttagagattgaaatgacacaataaactcataatgcttatgttgaactctaggtgtttgataaaac 31627299  T
Q  127 gtctcaatgaaagtttgattga 148  Q
    |||||||||||| ||| |||||    
T  31627300 gtctcaatgaaaatttaattga 31627321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 9193830 - 9193775
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagag 67  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9193830 aattgtagtttagatgttgattagagtaagtttgactcaaatgtggtagtttagag 9193775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 27757177 - 27757127
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtt 62  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  27757177 aattgtagtttagatgttgattagagtaagtatgactcaaatgtggtagtt 27757127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 27757104 - 27757053
Alignment:
Q  96 tttatgttgaactataggtgtttgataagatgtctcaatgaaagtttgattga 148  Q
    ||||||||||||| || ||||||||||| |||||||||||||| |||| ||||    
T  27757104 tttatgttgaactttatgtgtttgataa-atgtctcaatgaaaatttgtttga 27757053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 37939771 - 37939723
Alignment:
Q  100 tgttgaactataggtgtttgataagatgtctcaatgaaagtttgattga 148  Q
    ||||||||| |||||||||||||| ||||||||||| || |||| ||||    
T  37939771 tgttgaactctaggtgtttgataaaatgtctcaatggaaatttgtttga 37939723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 31011200 - 31011102
Alignment:
Q  17 tactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtg 115  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||| |||| || ||||| |||||||||||||||||| ||||||    
T  31011200 tactttagatgttgattagagtaagtttgactcaaatgtggcagtttatagattgaaatgacactatgaactcataatgtttatgttgaactctaggtg 31011102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 2413347 - 2413300
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtagtttagag 67  Q
    ||||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  2413347 tttagatgttgattagaataagtttgaatcaaatgtggtagttcagag 2413300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 9654116 - 9654078
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggt 58  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  9654116 tttagatgttgattagtgtaagtttgactcaaatgtggt 9654078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 6798702 - 6798588
Alignment:
Q  24 gatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataa 123  Q
    ||||||||||||||||||||| | |  |||||||||| ||||||||| |||| |||| ||||||||   |||||||||||||||| ||||||||| ||||    
T  6798702 gatgttgattagagtaagtttgagtgcaatgtggtagattagagattgaaatgacaccataaactcacgatgtttatgttgaactctaggtgtttaataa 6798603  T
Q  124 gatgtctcaatgaaa 138  Q
     ||||||||||||||    
T  6798602 aatgtctcaatgaaa 6798588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 28838410 - 28838364
Alignment:
Q  97 ttatgttgaactataggtgtttgataagatgtctcaatgaaagtttg 143  Q
    |||||||||||| |||||||||||||| || ||||||||||| ||||    
T  28838410 ttatgttgaactctaggtgtttgataaaatatctcaatgaaaatttg 28838364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 6298171 - 6298134
Alignment:
Q  97 ttatgttgaactataggtgtttgataagatgtctcaat 134  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  6298171 ttatgttgaactctaggtgtttgataaaatgtctcaat 6298134  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 9090350 - 9090318
Alignment:
Q  12 aattgtactttagatgttgattagagtaagttt 44  Q
    ||||||| |||||||||||||||||||||||||    
T  9090350 aattgtagtttagatgttgattagagtaagttt 9090318  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 41969535 - 41969422
Alignment:
Q  25 atgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgataag 124  Q
    ||||||||||||||||||||   |  ||| |||||||||||||||| |||| ||||||||||||| |||| ||||||||||||| ||| ||||| ||||     
T  41969535 atgttgattagagtaagtttatgtgcaatatggtagtttagagattgaaatgacacaataaactcataatatttatgttgaactctagctgtttcataaa 41969436  T
Q  125 atgtctcaatgaaa 138  Q
    ||||||||||||||    
T  41969435 atgtctcaatgaaa 41969422  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 42132083 - 42132208
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactata 111  Q
    |||| |||| |||||||||||||| |||||||| |||  | |||| |||||||||||||||||| ||||||||||| | | |||| |||||||||||  |    
T  42132083 aattatactatagatgttgattagggtaagtttgactatagtgtgctagtttagagattaaaataacacaataaacccatgatgtatatgttgaactcca 42132182  T
Q  112 ggtgtttgataagatgtctcaatgaa 137  Q
     |||||| || | |||| ||||||||    
T  42132183 agtgtttaattaaatgtttcaatgaa 42132208  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 41969366 - 41969253
Alignment:
Q  26 tgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaactataggtgtttgat-aag 124  Q
    |||||||||| |||||||| | |  |||| ||||||||||||||| |||| ||| |||  |||  ||||||||||||| || | |||||||||||| ||     
T  41969366 tgttgattagtgtaagtttgagtgcaatgaggtagtttagagattgaaatgacataatgtactaataatgtttatgtttaattctaggtgtttgataaaa 41969267  T
Q  125 atgtctcaatgaaa 138  Q
    ||||||||||||||    
T  41969266 atgtctcaatgaaa 41969253  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 13525141 - 13525103
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggt 58  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  13525141 tttagatgttgattagtgtaagtttgactcaaatgtggt 13525103  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 29905818 - 29905863
Alignment:
Q  93 atgtttatgttgaactataggtgtttgataagatgtctcaatgaaa 138  Q
    |||||||||||||||| ||  |||||||||| ||||||||||||||    
T  29905818 atgtttatgttgaactctatatgtttgataaaatgtctcaatgaaa 29905863  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 35425670 - 35425633
Alignment:
Q  97 ttatgttgaactataggtgtttgataagatgtctcaat 134  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  35425670 ttatgttgaactctaggtgtttgataaaatgtctcaat 35425633  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 34981030 - 34980990
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggtag 60  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  34981030 tttagatgttgattagggtatgtttgactcaaatgtggtag 34980990  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 701445 - 701541
Alignment:
Q  12 aattgtactttagatgttgattagagtaagtttcactcaaatgtggtagtttagagattaaaatcacacaataaactcgtaatgtttatgttgaact 108  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||  | |||||||||| || |||| ||||||||||    
T  701445 aattgtagtttagatgttgattagagtaagtttggctcaaatgtggtagtttatagattgaaatgtctcaataaactcatattgttaatgttgaact 701541  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 12024291 - 12024330
Alignment:
Q  20 tttagatgttgattagagtaagtttcactcaaatgtggta 59  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  12024291 tttagatgttgattagagtaagtttgactcaaatgtggta 12024330  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 26792986 - 26793027
Alignment:
Q  26 tgttgattagagtaagtttcactcaaatgtggtagtttagag 67  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  26792986 tgttgattagagtaagtttgactcaaatgtggtagattagag 26793027  T

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