View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_37 (Length: 237)
Name: NF3253_low_37
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 3123989 - 3123823
Alignment:
| Q |
1 |
tttgcataatttatttaggcttgaaaggaaaaaatgaaattccagtttctagtccatcaatattaaaggctgctaaatcatgctttgttttgtgtaactg |
100 |
Q |
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| T |
3123989 |
tttgcataatttatttaggcttgaaaggaaaaaatgaaattccagtttctagtccatcaatattaaaggctgctaaatcatgctttgttttgtgtaactg |
3123890 |
T |
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| Q |
101 |
tcaatatcaggttaagtgcatgcctccaaattaagttacctaaagtttccaatgtctagctatcttt |
167 |
Q |
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| T |
3123889 |
tcaatatcaggtcaagtgcatgcctccaaattaagttacctaaagtttccaatgtctagctatcttt |
3123823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 3126912 - 3126757
Alignment:
| Q |
1 |
tttgcataatttatttaggcttgaaaggaaaaaatgaaattccagtttctagtccatcaatattaaaggctgctaaatcatgctttgttttgtgtaactg |
100 |
Q |
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| T |
3126912 |
tttgcataattcatttaggcttgaaagaaacaaataaaattccagtttctagtccagaaatattaaaggctgctaaaccataagttgtttggtgtaac-- |
3126815 |
T |
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| Q |
101 |
tcaatatcaggttaagtgcatgcctccaaattaagttacctaaagtttccaatgtctagctatctttacactg |
173 |
Q |
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| T |
3126814 |
------------taagtgcatg---ccaaattaaattacctaaagtttccagtgtctagctatctttacactg |
3126757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 24109177 - 24109223
Alignment:
| Q |
127 |
caaattaagttacctaaagtttccaatgtctagctatctttacactg |
173 |
Q |
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| T |
24109177 |
caaattaagttgcctaaagtttccagtgtctaactatctttacactg |
24109223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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