View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_39 (Length: 226)
Name: NF3253_low_39
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 7907539 - 7907660
Alignment:
| Q |
18 |
aaagttcccaatggcaaagaccttctttttgttcgtccggacgccgtttttaataagaagaaaccaataaggttcttacttttaattacttcttctatta |
117 |
Q |
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| T |
7907539 |
aaagttcccaatggcaaagaccttctttttgttcgtccggacgccgtttttaataagaagaaaccaataaggttcttacttttaattacttcttctatta |
7907638 |
T |
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| Q |
118 |
gttattatgaagcaccgacacc |
139 |
Q |
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| T |
7907639 |
gttattatgaagcacccacacc |
7907660 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 7907699 - 7907776
Alignment:
| Q |
149 |
actgattgaatgtaaccatgtgagtgctacatatttattacattgttatttactaaggccctgtttggataaacaact |
226 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907699 |
actgattgaatgtaaccatgtgggtgctacatatctattacattgttatttactaaggccctgtttggataaacaact |
7907776 |
T |
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