View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3253_low_40 (Length: 221)
Name: NF3253_low_40
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 35205436 - 35205630
Alignment:
| Q |
19 |
cataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35205436 |
cataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgca |
35205535 |
T |
|
| Q |
119 |
ctcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgcctatgctac |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35205536 |
cgcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgccaatgctac |
35205630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University