View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_41 (Length: 218)
Name: NF3253_low_41
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34713993 - 34713774
Alignment:
| Q |
1 |
cttatctattaatttctctatcctcataatttctaattctactatgacaatgcatccttgcattttcttcttctctcaaaaa--tcatcatgtgaaatcc |
98 |
Q |
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| T |
34713993 |
cttatctcttaatttatttaccctcataatttctaattccactgtgacaatgcatccttgcatttttctcttctctaaaaaacctcatcatgtgaaatcc |
34713894 |
T |
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| Q |
99 |
aaatcattcatccttatcgagtaaagtggtagtagtcatttcgtttgtagtatataagtaccatgcatttacgttaagaatgttttactattttaaaaat |
198 |
Q |
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| T |
34713893 |
ataccattcatccttatcgagtaaagtggtagtagtcatttcgtttgtagtatataagtaccatgcatttacgttaagaatgttttactattttaaaaat |
34713794 |
T |
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| Q |
199 |
tatatacccaacttattcaa |
218 |
Q |
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|||||||||||||||||||| |
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| T |
34713793 |
tatatacccaacttattcaa |
34713774 |
T |
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