View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_45 (Length: 203)
Name: NF3253_low_45
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 12175486 - 12175320
Alignment:
| Q |
21 |
ataatgactggagtaagatcatgcgatatataattaatgttgggaaaattgagaacagatttattaccatcttttttgtcagatttctcagctgcggaga |
120 |
Q |
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| T |
12175486 |
ataatgaacggagtaagatcatgcggtatataattaatgttgggaaaattgagaacagatttattaccatcttttttgtcagatttctcagctgcggaga |
12175387 |
T |
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| Q |
121 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttcttataact |
187 |
Q |
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| T |
12175386 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttcttataact |
12175320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 12188394 - 12188295
Alignment:
| Q |
82 |
tattaccatcttttttgtcagatttctcagctgcggagatgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttctt |
181 |
Q |
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| T |
12188394 |
tattaccatcttttttatcagatttctcagcag---agatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttctt |
12188298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 12182389 - 12182290
Alignment:
| Q |
82 |
tattaccatcttttttgtcagatttctcagctgcggagatgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttctt |
181 |
Q |
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| T |
12182389 |
tattaccatcttttttatcagatttctcagcag---agatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgtt |
12182293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 12149528 - 12149469
Alignment:
| Q |
120 |
atgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttc |
179 |
Q |
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| T |
12149528 |
atgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttc |
12149469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 12146282 - 12146339
Alignment:
| Q |
121 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcatttt |
178 |
Q |
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| T |
12146282 |
tgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
12146339 |
T |
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