View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_46 (Length: 203)
Name: NF3253_low_46
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 774565 - 774735
Alignment:
| Q |
18 |
agagcagcaacaggtaatccaagattataaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagcaaatactgtgtgcctacaaggtt |
117 |
Q |
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| T |
774565 |
agagcagcaacaggtaatccaagattgtaaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagctaatactgtgtgcctacaaggtt |
774664 |
T |
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| Q |
118 |
gcctaaacaacacaaatatcacacgatgaattcctgatgttggtcttggattttcataactcactatctct |
188 |
Q |
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| T |
774665 |
gcctaaacaacacaaatatcacacgatgaatccctgatgttggtcttggattttcatagctcactatctct |
774735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 814498 - 814668
Alignment:
| Q |
18 |
agagcagcaacaggtaatccaagattataaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagcaaatactgtgtgcctacaaggtt |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
814498 |
agagcagcaacaggtaatccaagattgtaaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagctaatactgtgtgcctacaaggtt |
814597 |
T |
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| Q |
118 |
gcctaaacaacacaaatatcacacgatgaattcctgatgttggtcttggattttcataactcactatctct |
188 |
Q |
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| T |
814598 |
gcctaaacaacacaaatatcacacgatgaatccctgatgctggtcttggactttcataactcactatctct |
814668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 32845237 - 32845162
Alignment:
| Q |
20 |
agcagcaacaggtaatccaagattataaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagca |
95 |
Q |
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| T |
32845237 |
agcagcaacaggtgatccaagattgtagagttcagcaaattctcttgtgttgaaattttgtcgccatcctggagca |
32845162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 32865739 - 32865664
Alignment:
| Q |
20 |
agcagcaacaggtaatccaagattataaaattcagcaaaatctcttgtaatgaaattttgtctccatccaggagca |
95 |
Q |
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||||||||| || |||||||||| ||||||||| || ||||||||| |||||||||||| |||||| |||||| |
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| T |
32865739 |
agcagcaaccggcgatccaagattgtaaaattcaatgaattctcttgtattgaaattttgtcgccatcccggagca |
32865664 |
T |
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