View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_5 (Length: 527)
Name: NF3253_low_5
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Complemental strand, 32449339 - 32448837
Alignment:
| Q |
16 |
gaaataaggcaccaagtcaagttgcaggggaggtactatcattctttactcgtaataattttgcagtggttgatagaggagaaacaatcacgtaagtaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32449339 |
gaaataaggcaccaagtcaagttgcaggggaggtactatcattctttactcgtaataattttgcagtggttgatagaggagaaacaatcacgtaagtaac |
32449240 |
T |
|
| Q |
116 |
cattacattctctctttgattgctttctctttgcttttgcaatgctcaatagaagaaatttagaatccacaaaaatttaatgcaatgagtaagcagatag |
215 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32449239 |
cattacattctctctttaattgctttctctttgcttttgcaatgctcaacagaagaaatttagaatccacaaaaatttaatgcaatgagtaagcagatag |
32449140 |
T |
|
| Q |
216 |
attaatcaataagttaaatgttctaatcatggttttaaattgcgatcatattcatgttgcaattgttgatactgtggacatacatacgtatttgtggcga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32449139 |
attaatcaataagttaaatgttctaatcatggttttaaattgcgatcatattcatgttgcaattgttgatactgtggacatacatacgtatttgtggcga |
32449040 |
T |
|
| Q |
316 |
tgcaatctcaatagtgacgatcaccgaattctaaaaaccctcatcctagtaacttaatgacatttcgaaaataactaatcgaatttttatgttctttggt |
415 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32449039 |
tgcaatctcaatagtaacgatcaccgaattctaaaaaccctcattctagtaacttaatgacatttcaaaaataactaatcgaatttttatgttctttggt |
32448940 |
T |
|
| Q |
416 |
gaaagattttactaatcaaatctttgc-taggagctccagtttactatgaccaattaggccaatctttaatgttgtaagagaaccatttatcaaaagtct |
514 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32448939 |
gaaagattttactaatcaaatatttgcataggagctccagtttactatgaccaattaggccaatctttaatgttgtaaaagaaccatttatcaaaagtct |
32448840 |
T |
|
| Q |
515 |
ctg |
517 |
Q |
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||| |
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| T |
32448839 |
ctg |
32448837 |
T |
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