View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3253_low_6 (Length: 478)

Name: NF3253_low_6
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3253_low_6
NF3253_low_6
[»] chr7 (7 HSPs)
chr7 (1-459)||(33120011-33120474)
chr7 (1-341)||(33032574-33032914)
chr7 (111-241)||(34906304-34906434)
chr7 (111-241)||(34913891-34914021)
chr7 (119-241)||(1470597-1470719)
chr7 (114-167)||(35702424-35702477)
chr7 (394-459)||(33032444-33032509)
[»] chr6 (3 HSPs)
chr6 (1-170)||(22366574-22366743)
chr6 (122-192)||(26384421-26384491)
chr6 (394-459)||(22366823-22366888)
[»] chr5 (6 HSPs)
chr5 (118-241)||(10214390-10214513)
chr5 (118-241)||(10101033-10101156)
chr5 (118-241)||(9678699-9678822)
chr5 (118-241)||(10104836-10104959)
chr5 (119-192)||(21036232-21036305)
chr5 (119-192)||(20982827-20982899)
[»] chr4 (2 HSPs)
chr4 (108-205)||(41108147-41108244)
chr4 (125-192)||(7600923-7600990)
[»] chr8 (2 HSPs)
chr8 (121-247)||(7224365-7224491)
chr8 (119-179)||(1086910-1086970)
[»] chr3 (1 HSPs)
chr3 (119-179)||(5130615-5130675)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 33120474 - 33120011
Alignment:
Q  1 aacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatactaaatgtttatatactct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33120474 aacaaaagacagaaacctcatttttgaaactaatactacaaacatgaaataaagtcccacatcgtttggtttaggcttatactaaatgtttatatactct 33120375  T
Q  101 acgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctg 200  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33120374 acgcggagagcaacggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctg 33120275  T
Q  201 gatgaggatttgtgaccgtgtgatcagagcgagattaacggttctatggtgagacctacgggaatcattataagttgactgtagatgatcgttctcag-- 298  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      
T  33120274 gatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctatggtgagacctacgggaatcatcataagttgactgtagatgatcgttctcagcc 33120175  T
Q  299 ---ccagtctggttggggtggtcacacggtaatcttgacagatttccaatcnnnnnnnaattttgctaagataaaatgaattaacaagnnnnnnnntgat 395  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||        | ||    
T  33120174 agcccagtctggttggggtggtcacacggtaatcttgacagatttccaatctttttttaattttgctaagatagaatgaattaacaagaaaaaaaataat 33120075  T
Q  396 ttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatga 459  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  33120074 ttcataaggattttaattatggttgaagagaacgtaagtacctgaacttgactgatccatatga 33120011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 33032914 - 33032574
Alignment:
Q  1 aacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatactaaatgtttatatactct 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||| ||| |||| ||||||||||||||||       
T  33032914 aacaaaagacagaaacctcattttttaaactaatactacaaacatgaaatatagtcccacatcttttggttcaggattatgctaaatgtttatatacagc 33032815  T
Q  101 acgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctg 200  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032814 acgcggagagctttggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctg 33032715  T
Q  201 gatgaggatttgtgaccgtgtgatcagagcgagattaacggttctatggtgagacctacgggaatcattataagttgactgtagatgatcgttctcagcc 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  33032714 gatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctgtggtgagacccacgggaatcatcatgagttgactgtagatgatcgttctcagcc 33032615  T
Q  301 agtctggttggggtggtcacacggtaatcttgacagatttc 341  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  33032614 agtctggttggggtggtcacacggctgtcttgacagatttc 33032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 34906304 - 34906434
Alignment:
Q  111 caatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatt 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || |    
T  34906304 caattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggatgatgaat 34906403  T
Q  211 tgtgaccgtgtgatcagagcgagattaacgg 241  Q
       ||||||| |||||||||| |||||||||    
T  34906404 gaagaccgtgcgatcagagcgtgattaacgg 34906434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 34914021 - 34913891
Alignment:
Q  111 caatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatt 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || |    
T  34914021 caattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggatgatgaat 34913922  T
Q  211 tgtgaccgtgtgatcagagcgagattaacgg 241  Q
       ||||||| |||||||||| |||||||||    
T  34913921 gaagaccgtgcgatcagagcgtgattaacgg 34913891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 1470719 - 1470597
Alignment:
Q  119 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgaccg 218  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||    ||||||    
T  1470719 acgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgaccg 1470620  T
Q  219 tgtgatcagagcgagattaacgg 241  Q
    ||||||||||||  |||||||||    
T  1470619 tgtgatcagagcatgattaacgg 1470597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 35702424 - 35702477
Alignment:
Q  114 tggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtc 167  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35702424 tggtcacgaccttacttgaacaggatctgttctataggatggtactactgtgtc 35702477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 459
Target Start/End: Complemental strand, 33032509 - 33032444
Alignment:
Q  394 atttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatga 459  Q
    |||||||| |||||||| ||| ||||||||||||| || ||||||||||| ||||| |||||||||    
T  33032509 atttcatacggattttatttatggttgaagagaacatacgtacctgaactcgactgctccatatga 33032444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 22366574 - 22366743
Alignment:
Q  1 aacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatactaaatgtttatatactct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||  ||| ||||||||||||||||       
T  22366574 aacaaaagacagaaacctcatttttgaaactaatactacaaacatgaaatatagtcccacatcgtttggttcaggaatatgctaaatgtttatatacagc 22366673  T
Q  101 acgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt 170  Q
    | ||||  | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22366674 atgcggacaacaatagtcacgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt 22366743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 26384421 - 26384491
Alignment:
Q  122 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26384421 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacagaaaca 26384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 22366823 - 22366888
Alignment:
Q  394 atttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatga 459  Q
    |||||||| | |||||| ||| ||||||||||||| || |||||||||||||||||||||||||||    
T  22366823 atttcatacgcattttatttatggttgaagagaacatacgtacctgaacttgactgatccatatga 22366888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 10214390 - 10214513
Alignment:
Q  118 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||  |||||  || || ||||||||    
T  10214390 cacgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaaggagataggaacatatgtctggtagatgagttgtgacc 10214489  T
Q  218 gtgtgatcagagcgagattaacgg 241  Q
    |||||||||||||| |||||||||    
T  10214490 gtgtgatcagagcgtgattaacgg 10214513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 10101156 - 10101033
Alignment:
Q  118 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||    |||||    
T  10101156 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgacc 10101057  T
Q  218 gtgtgatcagagcgagattaacgg 241  Q
    |||||||||||||| |||||||||    
T  10101056 gtgtgatcagagcgtgattaacgg 10101033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 9678699 - 9678822
Alignment:
Q  118 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  || || |  ||||     
T  9678699 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttcaaaggagacaggaacatacgtctggtggatgaatcatgact 9678798  T
Q  218 gtgtgatcagagcgagattaacgg 241  Q
    |||||||||||||| |||||||||    
T  9678799 gtgtgatcagagcgtgattaacgg 9678822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 10104959 - 10104836
Alignment:
Q  118 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 217  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||  |||||  || ||    |||||    
T  10104959 cacgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaagaagacaggagcatacgtctggtggatgaaccatgacc 10104860  T
Q  218 gtgtgatcagagcgagattaacgg 241  Q
    |||||||||||||| |||||||||    
T  10104859 gtgtgatcagagcgtgattaacgg 10104836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 21036305 - 21036232
Alignment:
Q  119 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21036305 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaaca 21036232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 20982899 - 20982827
Alignment:
Q  119 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 192  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| || |||||    
T  20982899 acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaaggaggcacgaaca 20982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 41108244 - 41108147
Alignment:
Q  108 gagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatga 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41108244 gagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatga 41108147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 7600923 - 7600990
Alignment:
Q  125 ttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 192  Q
    ||||||| ||||||| ||||||||||| | |||| | ||||||||||||||||| ||| ||| |||||    
T  7600923 ttacttggacaggatttgttctataggcttgtacaattgtgtccttgatttctagggaaacatgaaca 7600990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 7224365 - 7224491
Alignment:
Q  121 gaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgaccgtg 220  Q
    |||||||||| || | ||| |||||||||||||||||  | || |||||||||||||||||||||| ||||||||||||||||||||| || |||  |||    
T  7224365 gaccttacttaaatatgatttgttctataggatcgtaacattgcgtccttgatttctaaggagacatgaacataaatctggatgaggaattatgaatgtg 7224464  T
Q  221 tgatcagagcgagattaacggttctat 247  Q
    |||| |||||  |||||||||||||||    
T  7224465 tgattagagcatgattaacggttctat 7224491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
Q  119 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 179  Q
    ||||||||||||||||| ||||| || |||| |||||||||| ||||||||||||||||||    
T  1086970 acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa 1086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
Q  119 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 179  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||    
T  5130615 acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa 5130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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