View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_7 (Length: 449)
Name: NF3253_low_7
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Original strand, 22568852 - 22569285
Alignment:
| Q |
7 |
tcgaagaatattccaacaatatttcacataaaaagagaataagttccaacggtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcat |
106 |
Q |
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| T |
22568852 |
tcgaagaaaattccaacagtatttcacataaaaagagaataagttccaacagtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcat |
22568951 |
T |
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| Q |
107 |
acattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgta |
206 |
Q |
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| T |
22568952 |
acattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgta |
22569051 |
T |
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| Q |
207 |
ttatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtacc |
306 |
Q |
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| T |
22569052 |
ttatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtacc |
22569151 |
T |
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| Q |
307 |
aatgatactttccat--------gtgttggtcttggcgatgatgaccgagaatcctcataaagacgaggaccctatacacccttcgatatgtcagccgtg |
398 |
Q |
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| T |
22569152 |
aatgatgctttccatgaagacgagtgttggtcttggtgatgatgaccgagaatcctcataaagacgaggaccctatacacccttccatatgtcagccgtg |
22569251 |
T |
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| Q |
399 |
agtgcgattgaaaagctatttccaatgtaagaac |
432 |
Q |
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| T |
22569252 |
agtgcgattgaaaagctatttccaatgtaagaac |
22569285 |
T |
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