View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3253_low_8 (Length: 444)
Name: NF3253_low_8
Description: NF3253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3253_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 42984924 - 42984508
Alignment:
| Q |
20 |
cttatatgcagcaattaccatggtccttgcaattacatttcctttctttggtgggcttctcagcttttttgggggatttgtatttgctccaaccacatat |
119 |
Q |
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| T |
42984924 |
cttatatgcagcaattaccatggtccttgcaattacatttcctttctttggtgggcttctcagcttttttgggggatttgtatttgctccaaccacatat |
42984825 |
T |
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| Q |
120 |
tttgtaagaaaagtaaaatatcttgcatgtttagatcaatggtgagtttaacaaaatcacgtcggccctgtgattttgtgaagctaaaaaagcaaatgct |
219 |
Q |
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| T |
42984824 |
tttgtaagaaaagtaaaatatcttgcatgtttagatcaatggtgagtttaacaaaatcacggcggccctgtgattttgtgaagctaaaaaagcaaatgct |
42984725 |
T |
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| Q |
220 |
gatgttaattatttttgtgatggtttgtagctcccttgcataatgtggatttttatttacaaacccaagctatttagcttgtcttggtgtgcaaattggg |
319 |
Q |
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| T |
42984724 |
gatgttaattatttttgtgatggtttgtagctcccttgcataatgtggatttttatttacaaacccaagctatttagcttgtcttggtgtgcaaattggg |
42984625 |
T |
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| Q |
320 |
tatgtaaactatatt-ttttccaataatggtatatttttgttacttcttattgtatgaatctgacttttcttgtaattgtgtcagttttgtattgtattc |
418 |
Q |
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| T |
42984624 |
tatgtaaactatatttttttccaatattggtatatttttgttacttcttattgtatgaatctgacttttcttgtaattgtgtcagttttgtattgtattc |
42984525 |
T |
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| Q |
419 |
ggagtctcattgatgat |
435 |
Q |
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| T |
42984524 |
ggagtctcattgatgat |
42984508 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 10810894 - 10810952
Alignment:
| Q |
146 |
atgtttagatcaatggtgagtttaacaaaatcacgtcggccctgtgattttgtgaagct |
204 |
Q |
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| T |
10810894 |
atgtttagattaacggtgagtttagcaaaatcacgatggcattgtgattttgtgaagct |
10810952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 43855341 - 43855422
Alignment:
| Q |
243 |
tttgtagctcccttgcataatgtggatttttatttacaaacccaagctatttagcttgtcttggtgtgcaaattgggtatgt |
324 |
Q |
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| T |
43855341 |
tttgtagcttccttgcattatgtggcttgctatttacaaacctaagaggtttagcttgtcttggttcaccaattgggtatgt |
43855422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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