View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3254_low_2 (Length: 357)
Name: NF3254_low_2
Description: NF3254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3254_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 1396167 - 1396486
Alignment:
| Q |
17 |
caataatcctacatgtgttttcttgttactctcgacctctgtcgcctctctgtcaaaggcttctctttttcttctattggatttggatttccatcactca |
116 |
Q |
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| T |
1396167 |
caataatcctacatgtgttttcttgttactctcgacctttgtcgcctctctgtcaaaggcttctctttatcttctattggatttggatttccatcactca |
1396266 |
T |
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| Q |
117 |
aaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgctgctagctggatctctaattctcgaggatctacgattgtctgatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1396267 |
aaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgcttctagctggatctctaattctcgaggatctacgattgtctgatat |
1396366 |
T |
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| Q |
217 |
atgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaacctta-agcttacccaaattgactaaagcagatatcagtcaatgttt |
315 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1396367 |
atacattcattctgaggaatagcttgattctcttaaaattcaatagtttgaaaccttatagcttacccaaattgactaaagcagatatcagtcaatgttt |
1396466 |
T |
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| Q |
316 |
gtattcatgttatacgatga |
335 |
Q |
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| T |
1396467 |
gtattcatgttatatgatga |
1396486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 74 - 335
Target Start/End: Original strand, 1407226 - 1407497
Alignment:
| Q |
74 |
ggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcatta------aattaaatggaattcaagatttcatgt |
167 |
Q |
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| T |
1407226 |
ggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcattgcaactcattaaaattaaattaaatggaattcaagatttcatgt |
1407325 |
T |
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| Q |
168 |
tgctgctagctggatctctaattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttga |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| || |
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| T |
1407326 |
tgcttctagctggatctctaattctcgaggatctacgattgtctgatatatacattcattctaaggaatagcttgattctcttaccattcaatagttcga |
1407425 |
T |
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| Q |
268 |
aaccttaagcttacccaaattgactaaagcagatatcagtcaa----tgtttgtattcatgttatacgatga |
335 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
1407426 |
aaccttaagcttacccaaattgactaaagcagatatcggtcaatgtttgtttgtattcatgttatatgatga |
1407497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 1025640 - 1025559
Alignment:
| Q |
38 |
cttgttactctcgacctctgtcgcctctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaa |
119 |
Q |
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| T |
1025640 |
cttgttagtctcgatctccgtcacttctctgttaagggtttttctttttcttccattggatttggatttccatcactcaaaa |
1025559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 1407186 - 1407222
Alignment:
| Q |
17 |
caataatcctacatgtgttttcttgttactctcgacc |
53 |
Q |
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| T |
1407186 |
caataatcctacatgtgttttcttgttactctcgacc |
1407222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 1722953 - 1722916
Alignment:
| Q |
71 |
aaaggcttctctttttcttctattggatttggatttcc |
108 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |
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| T |
1722953 |
aaaggcttttctttttcttctactggatttggatttcc |
1722916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 35767595 - 35767662
Alignment:
| Q |
63 |
tctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttg |
130 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
35767595 |
tctctgtcaaaggtttttctttttcttcaattggatttggatttccatcactcaaaaccctttggttg |
35767662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 8315976 - 8316067
Alignment:
| Q |
38 |
cttgttactctcgacctctgtcgcctctctgtcaaaggcttctctttttcttctattggatttggatttccatcactcaaaaccctttcgttg |
130 |
Q |
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||||||| ||| |||||| |||| |||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
8315976 |
cttgttagtcttgacctccatcgcttctctgtcaagggctttttttttt-ttccattggatttggatttccatcactcaaaaccctttggttg |
8316067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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