View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3254_low_3 (Length: 225)
Name: NF3254_low_3
Description: NF3254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3254_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 37932255 - 37932037
Alignment:
| Q |
1 |
cgtcttatattggtcattgctatcgttggtcactattgtgttgtgttggactatatctcannnnnnnaatctgagagaccaacttactatcaccaccaac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37932255 |
cgtcttatattggtcattgccatcgttggtcactattgtgttgggttggactatatctcatttttttaatctgagagaccaacttactatcaccaccaac |
37932156 |
T |
|
| Q |
101 |
acataactataatgggtaattattgcgatcaacctcagcaaggcgacaacccaccttcatatcagcatcaacgctagccaacaagagggagataacatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37932155 |
acataactataatgggtaattattgcgatcaacatcaacaaggcgacaacccaccttcatatcagcatcaacgctagccaacaagagggagataacatat |
37932056 |
T |
|
| Q |
201 |
tcatgttgagtaagctgaa |
219 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
37932055 |
tcatgttgagtaagttgaa |
37932037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University