View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_high_1 (Length: 724)
Name: NF3255_high_1
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Complemental strand, 2356906 - 2356193
Alignment:
| Q |
1 |
ttgtccgccgttgttttatgtaaatgaacttctgcttcatcttcttcaattcattctcagagacatgaatacatcatcccttggaagagactcgaccact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356906 |
ttgtccgccgttgttttatgtaaatgaacttctgcttcatcttcttcaattcattctcagagacatgaatacatcatcccttggaagagactcgaccact |
2356807 |
T |
|
| Q |
101 |
ccatctcattcccctttctccggtaaccatttctcttaatcacattacttaatcacaatttcatttatagtttctgagctgtttgaattcagattgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2356806 |
ccatctcattcccctttctccggtaaccatttctcttaatcacattacttaatcacaatttcatttgtagtttctgagctgtttgaattcagattgttaa |
2356707 |
T |
|
| Q |
201 |
aactatatacattatacgtgttgttgatgtgaaattgatctctgcatgatgcatagattttttcttattattctgagtatagattgtaaaaacgacgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356706 |
aactatatacattatacgtgttgttgatgtgaaattgatctctgcatgatgcatagattttttcttattattctgagtatagattgtaaaaacgacgatg |
2356607 |
T |
|
| Q |
301 |
taggttaaattttgttccaatttcattttgnnnnnnncgttacctattgctttaattctttgaatcatgatattcttcatctttagtaatgatttcacag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356606 |
taggttaaattttgttccaatttcattttgtttttttcgttacctattgctttaattctttgaatcatgatattcttcatctttagtaatgatttcacag |
2356507 |
T |
|
| Q |
401 |
ttgaataatgtcttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacgcaacactcacactgatca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356506 |
ttgaataatgtcttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacgcaacactcacactgatca |
2356407 |
T |
|
| Q |
501 |
aattttgagaaaatgacataattcaattatttcaatgtaattacatgtgtcggnnnnnnntgtaattcaaattttgnnnnnnntgaattgatcttaactt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
2356406 |
aattttgagaaaatgacataattcaattatttcaatttaattacatgtgtcggaaaaaaatgtaattcaaattttgaaaaaaatgaattgatcttaactt |
2356307 |
T |
|
| Q |
601 |
gtttagaatgaggccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctcca |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356306 |
gtttagaatgaggccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctcca |
2356207 |
T |
|
| Q |
701 |
ctttcctctctgct |
714 |
Q |
| |
|
|||||||||||||| |
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| T |
2356206 |
ctttcctctctgct |
2356193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 620 - 714
Target Start/End: Complemental strand, 22722217 - 22722123
Alignment:
| Q |
620 |
ttgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgct |
714 |
Q |
| |
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|||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||| |
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|
| T |
22722217 |
ttgtaggtataaatggagtctgtttgatgagaaatgcatggaaagaggatcaacgtccatctttcattgattttatgtcaactttcctctctgct |
22722123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 661 - 714
Target Start/End: Original strand, 23747522 - 23747575
Alignment:
| Q |
661 |
aaagaggatcaacatccttccttcattgattttatctccactttcctctctgct |
714 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
23747522 |
aaagaggatcaacgtccatccttcattgattttatctccactttcctctctgct |
23747575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 30080559 - 30080523
Alignment:
| Q |
491 |
acactgatcaaattttgagaaaatgacataattcaat |
527 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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|
| T |
30080559 |
acactgataaaattttgagaaaatgacataattcaat |
30080523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 24462328 - 24462292
Alignment:
| Q |
491 |
acactgatcaaattttgagaaaatgacataattcaat |
527 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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|
| T |
24462328 |
acactgatcaaattttgaaaaaatgacataattcaat |
24462292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 527
Target Start/End: Complemental strand, 18946085 - 18946056
Alignment:
| Q |
498 |
tcaaattttgagaaaatgacataattcaat |
527 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
18946085 |
tcaaattttgagaaaatgacataattcaat |
18946056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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