View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_high_14 (Length: 201)
Name: NF3255_high_14
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_high_14 |
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| [»] scaffold0598 (1 HSPs) |
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Alignment Details
Target: scaffold0598 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0598
Description:
Target: scaffold0598; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 6131 - 5965
Alignment:
| Q |
17 |
atattggttttagatattgaattttgcttctctttaagaactcatgttcgattcttgttagatagattaatttaacttctttnnnnnnnnnnnnnnnnnt |
116 |
Q |
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| T |
6131 |
atattggttttaaatattaaattttacttctctttaagagctcatgttcgattcttgttagatagattaatttaacttctttaaaaaaaataaaaa---t |
6035 |
T |
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| Q |
117 |
gcatacaagtccctaaagacccgcagggagagccccgcacataagtccctatgcctttaatgtactttgt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6034 |
gcatacaagtccctaaagacccgcagggagagccccgcacatatgtccctatgcctttaatgtactttgt |
5965 |
T |
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