View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_high_6 (Length: 282)
Name: NF3255_high_6
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 6094071 - 6094340
Alignment:
| Q |
1 |
acaatttctgttgttgata-tgaagacagattttaaatgcaagacaaagacatcgtactatcattttattggcatcattcaatttactatattataagaa |
99 |
Q |
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| T |
6094071 |
acaatttctgttgttgataatgaagacagattttaaatgcaagacaaagacatcatactatcattttattggcatcattcaatttacta---tataagaa |
6094167 |
T |
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| Q |
100 |
agcttggttttatatgacctgtggctctaatttggacctttaaactttttcatttggnnnnnnnatctacttcatgtgaaaattctaacaaaatgatgag |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
6094168 |
agcttggttttatatgacctgtgactctaatttggacctttaaaccttttcatttggtttttttatctacttcatgtgaaaattctaacaaaatgataag |
6094267 |
T |
|
| Q |
200 |
ctannnnnnngtagaagaaaaaagggggcgccttccttttaaaaattcaattttaacttattcaaaccctttg |
272 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094268 |
ctatttttttgtagaagaaaaaagggggcgccttccttttaaaaattcaattttaacttattcaaaccctttg |
6094340 |
T |
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