View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3255_high_7 (Length: 275)

Name: NF3255_high_7
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3255_high_7
NF3255_high_7
[»] chr2 (9 HSPs)
chr2 (10-260)||(41086987-41087237)
chr2 (20-231)||(1269141-1269352)
chr2 (25-231)||(37770857-37771065)
chr2 (46-231)||(17105072-17105255)
chr2 (30-231)||(7695729-7695928)
chr2 (59-220)||(39339115-39339275)
chr2 (167-231)||(7873959-7874023)
chr2 (163-216)||(16959709-16959762)
chr2 (169-221)||(14106883-14106935)
[»] chr6 (3 HSPs)
chr6 (19-234)||(20702013-20702228)
chr6 (55-231)||(16510539-16510713)
chr6 (25-137)||(3880799-3880912)
[»] scaffold0119 (1 HSPs)
scaffold0119 (20-231)||(42350-42561)
[»] chr8 (6 HSPs)
chr8 (19-231)||(10248762-10248972)
chr8 (86-231)||(17657282-17657426)
chr8 (145-234)||(36630495-36630583)
chr8 (145-231)||(34389313-34389398)
chr8 (145-231)||(32066630-32066715)
chr8 (182-231)||(15821751-15821800)
[»] chr7 (11 HSPs)
chr7 (19-234)||(16954311-16954524)
chr7 (8-220)||(42533451-42533663)
chr7 (11-230)||(1320455-1320674)
chr7 (8-220)||(8744824-8745035)
chr7 (87-221)||(33434778-33434913)
chr7 (75-184)||(16829183-16829291)
chr7 (55-231)||(47326131-47326306)
chr7 (116-231)||(6584722-6584834)
chr7 (145-231)||(25160477-25160562)
chr7 (102-222)||(3419950-3420068)
chr7 (145-231)||(10243848-10243933)
[»] chr3 (10 HSPs)
chr3 (47-231)||(37123050-37123234)
chr3 (44-231)||(14193596-14193784)
chr3 (28-231)||(4464156-4464358)
chr3 (45-231)||(25647341-25647528)
chr3 (55-231)||(47235376-47235551)
chr3 (88-234)||(14755543-14755688)
chr3 (59-208)||(20611466-20611614)
chr3 (145-227)||(19176168-19176249)
chr3 (102-231)||(34476046-34476173)
chr3 (158-231)||(45163509-45163581)
[»] chr5 (8 HSPs)
chr5 (9-231)||(26046164-26046385)
chr5 (25-231)||(13954449-13954653)
chr5 (44-231)||(7195475-7195662)
chr5 (8-218)||(8297148-8297350)
chr5 (8-139)||(14302629-14302760)
chr5 (88-229)||(29087211-29087350)
chr5 (110-220)||(24072564-24072671)
chr5 (102-220)||(7392322-7392440)
[»] chr1 (10 HSPs)
chr1 (71-235)||(9313487-9313653)
chr1 (65-230)||(10785583-10785748)
chr1 (94-231)||(27101970-27102096)
chr1 (25-231)||(52278166-52278363)
chr1 (87-198)||(7857344-7857454)
chr1 (145-231)||(46693154-46693239)
chr1 (145-234)||(24684811-24684899)
chr1 (116-231)||(16147229-16147341)
chr1 (145-231)||(31586096-31586181)
chr1 (163-217)||(50589554-50589608)
[»] scaffold0063 (1 HSPs)
scaffold0063 (98-231)||(57852-57985)
[»] scaffold0050 (1 HSPs)
scaffold0050 (25-231)||(36362-36571)
[»] chr4 (7 HSPs)
chr4 (59-139)||(22811410-22811490)
chr4 (25-231)||(19672763-19672966)
chr4 (55-229)||(30964104-30964276)
chr4 (37-231)||(38639638-38639831)
chr4 (145-231)||(8254688-8254773)
chr4 (145-231)||(8268106-8268191)
chr4 (27-119)||(25752942-25753035)
[»] scaffold0200 (1 HSPs)
scaffold0200 (20-105)||(19167-19252)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 41086987 - 41087237
Alignment:
Q  10 gcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaa 109  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  41086987 gcacacaacaagtaggacaaacgacaagataagcggtagtgcaagcaacaaacagatcaataggaaaaggcttagctcaacgggacccgctacctccaaa 41087086  T
Q  110 caccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccc 209  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  41087087 caccctagacaccttaacaaccccaaaaaacgcatacaagagctagtaacgacgaataaggacccgagtaacagaggctgactccaaaagaaatcacccc 41087186  T
Q  210 caacaaacacccgcctcctcacatattatatctaaaataaaatgtttttca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41087187 caacaaacacccgcctcctcacatattatatctaaaataaaatgtttttca 41087237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 1269352 - 1269141
Alignment:
Q  20 agtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaac 119  Q
    |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| ||||||||| | || | ||| |||||||||||| |||||    
T  1269352 agtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatccaaaggaaaaggcttagctcaatgagatcggctccctccaaacaccataaac 1269253  T
Q  120 accttaacaactccaaaaaatgcatacaaaagctagtaacgacg-aataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaaca 218  Q
    || |||||||| || ||||| ||| |||| ||||||| |||||| || |||||||||||||| |||||   |||||| ||||||||||||||||||||||    
T  1269252 actttaacaac-cccaaaaacgcaaacaagagctagtgacgacgaaacaaggacccgagtaatagaggcaacctccagaagaaatcacccccaacaaaca 1269154  T
Q  219 cccgcctcctcac 231  Q
    |||||||||||||    
T  1269153 cccgcctcctcac 1269141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 37770857 - 37771065
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa-cacct 123  Q
    ||||||||||||||||   |||||||||| |||| || ||||||| ||||| | | | | | ||||  |||||  | ||||||||||||||||| |||||    
T  37770857 gacaaacgacaagatatacggtggtgcaaacaacgaataaatcaaaaggaagaagctcaacacaacatgacccatttcctccaaacaccctaaaacacct 37770956  T
Q  124 taacaactccaaaaaat-gcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccg 222  Q
    ||||||| ||||||||  ||| |||||||||||| |||||||| |||||||||||| | |||||  |||||||| ||||||||||| |||||||||||||    
T  37770957 taacaaccccaaaaaaacgcaaacaaaagctagtgacgacgaacaaggacccgagttatagaggcagcctccaacagaaatcaccctcaacaaacacccg 37771056  T
Q  223 cctcctcac 231  Q
    |||||||||    
T  37771057 cctcctcac 37771065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 17105255 - 17105072
Alignment:
Q  46 tggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcata 145  Q
    |||||||| || |||||||||||| ||||||||| | | | |||||||||  ||  |||| |||||||||||||||||||||| | | ||||| |||| |    
T  17105255 tggtgcaaacaccaaacaaatcaaaaggaaaaggctcatcacaacgggacaagcaccctctaaacaccctaaacaccttaacagc-caaaaaagtgcaaa 17105157  T
Q  146 caaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
     || ||||||| |||||||| | ||||| | ||| |||||| |||||||||| ||||||| ||||||||||||| |||||||||||    
T  17105156 taagagctagtgacgacgaacatggacctgtgtagcagaggctgcctccaaaggaaatca-ccccaacaaacacacgcctcctcac 17105072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 7695928 - 7695729
Alignment:
Q  30 acgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaa 129  Q
    |||||| |||||| |||||||||| ||||||||| ||||| ||||||||| | | | ||| || |  |||| | || ||||| |||||||||||||||||    
T  7695928 acgacatgataagcggtggtgcaaacaacaaacatatcaaaaggaaaaggctcaacacaaaggaattcgcttcttctaaacagcctaaacaccttaacaa 7695829  T
Q  130 ctccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctc 229  Q
    | |||||||| ||| | || ||||||  ||  |||| ||||||||||||||||||||  ||||| |||| |||||| | ||||||||||| |||||| ||    
T  7695828 c-ccaaaaaacgcaaa-aagagctagggacagcgaacaaggacccgagtaacagaggcagcctctaaaataaatcaactccaacaaacactcgcctcttc 7695731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 39339115 - 39339275
Alignment:
Q  59 aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaa 158  Q
    ||||||||||| ||||||||| | | | ||||| ||| | |  |||||||||  | ||||||||| ||| || |||||||   || |||| |||||||||    
T  39339115 aaacaaatcaaaaggaaaaggctcaacacaacgtgacacacaccctccaaacttcgtaaacacctaaaccac-ccaaaaagcacaaacaagagctagtaa 39339213  T
Q  159 cgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacc 220  Q
    ||||||| | ||||||| ||||||| |||||| || |||  ||||||||| |||||| ||||    
T  39339214 cgacgaacatggacccgtgtaacaggggttgcttctaaagaaaatcacccacaacaaccacc 39339275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 7874023 - 7873959
Alignment:
Q  167 aaggacccgagtaacagaggttgcctccaaaag-aaatcacccccaacaaacacccgcctcctcac 231  Q
    ||||||||| | |||||| |||||||||||||| || |||||||||||||| |||| |||||||||    
T  7874023 aaggacccgtgaaacagatgttgcctccaaaagtaactcacccccaacaaa-accctcctcctcac 7873959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 16959762 - 16959709
Alignment:
Q  163 gaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaa 216  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| |||||||    
T  16959762 gaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaaa 16959709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 14106883 - 14106935
Alignment:
Q  169 ggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacaccc 221  Q
    |||||||||||||||| |  |||||||||||||| ||| | ||||||||||||    
T  14106883 ggacccgagtaacagaagcagcctccaaaagaaaacacactcaacaaacaccc 14106935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 20702013 - 20702228
Alignment:
Q  19 aagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa 118  Q
    ||||||||||||| |||||||| | ||| |||||| ||||||||| |||||  |||||| ||   ||||||||||||||||| |||||||||||||||||    
T  20702013 aagtaggacaaacaacaagatacgcggtagtgcaaacaacaaacagatcaaacggaaaaagtaccgctcaacgggacccgcttcctccaaacaccctaaa 20702112  T
Q  119 caccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaaca 218  Q
    |||||||||||  ||||||||||||||||| | ||||| |||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  20702113 caccttaacaatcccaaaaaatgcatacaagaactagtgacgacgaacaaggacccgagtaacaaaggctacctccaaaagaaatcacccccaacaaaca 20702212  T
Q  219 cccgcctcctcacata 234  Q
    ||||||||||||||||    
T  20702213 cccgcctcctcacata 20702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 16510539 - 16510713
Alignment:
Q  55 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 154  Q
    ||||||||||||||| ||||||||| | | | |||||| || |||  ||||||||| || ||||||||| ||| || | ||||   | | |||| |||||    
T  16510539 caacaaacaaatcaaaaggaaaaggctcaacacaacggaacacgcaccctccaaactccataaacacctaaaccacccgaaaagcagaa-acaagagcta 16510637  T
Q  155 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    || |||||||| | ||||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  16510638 gtgacgacgaacatggacccgtgtaagagaggtttcctccaaaggaaatca-ccccaacaaacacccgcctcctcac 16510713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 3880799 - 3880912
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcc-aaacaccctaaacacct 123  Q
    |||||| |||| |||| |||||||||||| ||||||| | ||||| ||||||| | | | |||||| ||||||||| | ||| |||||||||||||| ||    
T  3880799 gacaaaggacatgatatgtggtggtgcaaacaacaaatatatcaaaaggaaaaagctcaactcaacaggacccgcttcttccaaaacaccctaaacatct 3880898  T
Q  124 taacaactccaaaa 137  Q
    ||||| | ||||||    
T  3880899 taacagccccaaaa 3880912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 42350 - 42561
Alignment:
Q  20 agtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaac 119  Q
    |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| ||||||||| | || | ||| |||||||||||| |||||    
T  42350 agtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatccaaaggaaaaggcttagctcaatgagatcggctccctccaaacaccataaac 42449  T
Q  120 accttaacaactccaaaaaatgcatacaaaagctagtaacgacg-aataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaaca 218  Q
    || |||||||| || ||||| ||| |||| ||||||| |||||| || |||||||||||||| |||||   |||||| ||||||||||||||||||||||    
T  42450 actttaacaac-cccaaaaacgcaaacaagagctagtgacgacgaaacaaggacccgagtaatagaggcaacctccagaagaaatcacccccaacaaaca 42548  T
Q  219 cccgcctcctcac 231  Q
    |||||||||||||    
T  42549 cccgcctcctcac 42561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 10248762 - 10248972
Alignment:
Q  19 aagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa 118  Q
    ||||| |||||||||||||  |||| ||||||||| |||||||| |||||| ||||| ||  | |||||||||||||| ||| |||||||||||| ||||    
T  10248762 aagtaagacaaacgacaaggcaagtagtggtgcaaacaacaaaccaatcaaaaggaatagactaagctcaacgggacctgctccctccaaacaccttaaa 10248861  T
Q  119 caccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaaca 218  Q
    ||||||||||| |||||||||  || |||| ||||||| |||||||||||||||||||||||||| |    |||||| ||||||||| ||||| ||||||    
T  10248862 caccttaacaa-tccaaaaaactcaaacaagagctagtgacgacgaataaggacccgagtaacagcgacaacctccagaagaaatca-ccccagcaaaca 10248959  T
Q  219 cccgcctcctcac 231  Q
    ||| |||||||||    
T  10248960 ccctcctcctcac 10248972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 17657282 - 17657426
Alignment:
Q  86 tcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagag 185  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||  ||| ||||||||| |||| ||||||| || || || |||||||||| ||||||||    
T  17657282 tcaacgggatccgcttcctccaaacaccataaacaccttaacag-tcccaaaaatgcaaacaagagctagtgacaacaaacaaggacccgaataacagag 17657380  T
Q  186 gttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |  |||||||||| |||||||| ||||| |||| ||||||||||||    
T  17657381 gcagcctccaaaacaaatcacctccaacgaacatccgcctcctcac 17657426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 36630583 - 36630495
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacata 234  Q
    |||| ||||||| |||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||    
T  36630583 acaagagctagtgacgacgaacaaggacccgtgtaacagaggttgcttccaaaggaaatca-ccccaacaagcacccgcctcctcacata 36630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 34389313 - 34389398
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | ||||||| |||||||||||||| || ||| ||||||| ||||||||| |||||||||||||||    
T  34389313 acaagagctagtgacgacgaacatggacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaagcacccgcctcctcac 34389398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 32066630 - 32066715
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | | ||||  |||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||    
T  32066630 acaagagctagtgacgacgaacatgtacccatgtaacagaggttgcttctaaaggaaatca-ccccaacaaacacccacctcctcac 32066715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 15821751 - 15821800
Alignment:
Q  182 agaggttgcctccaaaa-gaaatcacccccaacaaacacccgcctcctcac 231  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  15821751 agaggctgcctccaaaaagaaatcacccc-aacaaacacccgcctcctcac 15821800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 16954524 - 16954311
Alignment:
Q  19 aagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa 118  Q
    ||||| |||||||||||||||| |  ||||||||| ||||||||| ||| | ||||||||| | | ||||||| ||||||||||||||||| ||||||||    
T  16954524 aagtatgacaaacgacaagatatgcagtggtgcaaacaacaaacatatccaaaggaaaaggctcaactcaacgagacccgctacctccaaaaaccctaaa 16954425  T
Q  119 caccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaaca 218  Q
    |||||||||||   | ||||||||| || | || |||| ||||| || ||| |||||||||||| ||  |||||||| | ||||||||||||||||||||    
T  16954424 caccttaacaa--tcgaaaaatgcaaactagagatagtgacgacaaacaagtacccgagtaacaaagactgcctccagacgaaatcacccccaacaaaca 16954327  T
Q  219 cccgcctcctcacata 234  Q
    | | ||||||||||||    
T  16954326 ctctcctcctcacata 16954311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 42533451 - 42533663
Alignment:
Q  8 cagcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaac-aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcc 106  Q
    ||||||| || ||||| |||||||||||||| |   |||||||||| |||| ||||||||||| ||||||||| | ||  ||||||||| |||| |||||    
T  42533451 cagcacacaaaaagtatgacaaacgacaagagatacggtggtgcaaacaaccaaacaaatcaaaaggaaaaggctcagaacaacgggacacgcttcctcc 42533550  T
Q  107 aaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcac 206  Q
    || |||| |||||||||||||||| |||||||   || |||| ||| | | |||||||| | |||||||||||||||| | | |||||||||||||||||    
T  42533551 aaccaccttaaacaccttaacaac-ccaaaaatcacaaacaagagccaatgacgacgaacatggacccgagtaacagatgctacctccaaaagaaatcac 42533649  T
Q  207 ccccaacaaacacc 220  Q
    | | ||||||||||    
T  42533650 ctctaacaaacacc 42533663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 1320674 - 1320455
Alignment:
Q  11 cacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaac 110  Q
    ||||||| ||||| | ||| ||||| |||| | |||||||||| ||||||||| ||  | ||| ||||  | ||||||||||||||| || || ||||||    
T  1320674 cacagaaaaagtatggcaaccgacatgatatgcggtggtgcaaacaacaaacagattcaaagggaaagactcagctcaacgggacccacttccaccaaac 1320575  T
Q  111 accctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaat-aaggacccgagtaacagaggttgcctccaaaagaaatcacccc 209  Q
    ||| ||||||||| |||||  | |||||||||| |||| ||||||| ||||||||  ||||||||| |||| | ||| |||||| |||||||||||||||    
T  1320574 accataaacacct-aacaatcctaaaaaatgcaaacaagagctagtgacgacgaaacaaggacccgtgtaaaataggctgcctctaaaagaaatcacccc 1320476  T
Q  210 caacaaacacccgcctcctca 230  Q
    |||||||||||  ||||||||    
T  1320475 caacaaacaccttcctcctca 1320455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 8745035 - 8744824
Alignment:
Q  8 cagcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcca 107  Q
    ||||||| || ||| | ||||||||||| |||| | |||||||||| ||||||| | ||||| |||| |||| | | ||||||  ||| |||| ||||||    
T  8745035 cagcacacaaaaagcatgacaaacgacatgatatgcggtggtgcaaacaacaaatagatcaaaaggagaaggctcaactcaacaagactcgcttcctcca 8744936  T
Q  108 aacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc 207  Q
    |||| | |||||||||||||||| | |||||| ||| ||||  |||||| |||||||| ||||| |||||||||| |||   ||||||||||| ||||||    
T  8744935 aacatcgtaaacaccttaacaac-cgaaaaaacgcaaacaagggctagtgacgacgaacaaggaaccgagtaacaaaggaaacctccaaaagagatcacc 8744837  T
Q  208 cccaacaaacacc 220  Q
    |||||||||||||    
T  8744836 cccaacaaacacc 8744824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 33434913 - 33434778
Alignment:
Q  87 caacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcata-caaaagctagtaacgacgaataaggacccgagtaacagag 185  Q
    |||||||||||||| ||||||||||||||||| |||| ||| || | |||||   || | ||  ||||||| |||||||| |  ||||||||||||||||    
T  33434913 caacgggacccgctccctccaaacaccctaaatacctaaaccacccaaaaaagcacaaaacaggagctagtgacgacgaacatagacccgagtaacagag 33434814  T
Q  186 gttgcctccaaaagaaatcacccccaacaaacaccc 221  Q
    ||||||| |||| |||||||||||||||||||||||    
T  33434813 gttgccttcaaaggaaatcacccccaacaaacaccc 33434778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 16829183 - 16829291
Alignment:
Q  75 aaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggaccc 174  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| ||| || ||||||||| ||||| || ||| || |    
T  16829183 aaaggcttaactcaacgggacccgctacctccaaaaaccctaaacaccttaaccact-gaaaaaacgcaaactaaagctagtgacgacaaacaagtactc 16829281  T
Q  175 gagtaacaga 184  Q
    ||||||||||    
T  16829282 gagtaacaga 16829291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 47326131 - 47326306
Alignment:
Q  55 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 154  Q
    ||||||||||||||| ||||||||| | | | ||||| ||| |||  ||||||||| || |||| |||| ||| || |||||||   || |||| |||||    
T  47326131 caacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaactccgtaaatacctaaaccac-ccaaaaagcacaaacaagagcta 47326229  T
Q  155 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    ||||||||||| | ||||||| |||||| ||||||| || ||| |||||||||| |||||| | ||| |||||||||    
T  47326230 gtaacgacgaacatggacccgtgtaacaaaggttgcttctaaaggaaatcacccacaacaaccgcccacctcctcac 47326306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 6584834 - 6584722
Alignment:
Q  116 aaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaa 215  Q
    ||||||||||||||| |  | ||||||| |||| ||||||  |||||||  | ||||||| |||| ||||| |  ||||||||||||||| |||||||||    
T  6584834 aaacaccttaacaaccc--ataaatgcaaacaagagctagcgacgacgatcatggacccgtgtaatagaggctatctccaaaagaaatca-ccccaacaa 6584738  T
Q  216 acacccgcctcctcac 231  Q
    ||||| ||||||||||    
T  6584737 acacctgcctcctcac 6584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 25160562 - 25160477
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| |   || ||||||||||| |||||||||||||||||||||    
T  25160562 acaagagctagtgacgacgaacatggacccgtgtaacataggttgctttttaaggaaatcacccc-aacaaacacccgcctcctcac 25160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 3419950 - 3420068
Alignment:
Q  102 cctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaa 201  Q
    ||||||||| || ||||||||| ||| || |||||||   || |||| ||||||| || ||||| | ||||||| |||||||||||||| ||||||  ||    
T  3419950 cctccaaactccgtaaacacctaaaccac-ccaaaaagcacaaacaagagctagtgacaacgaacatggacccgtgtaacagaggttgcttccaaagaaa 3420048  T
Q  202 atcacccccaacaaacacccg 222  Q
    |||| ||||||||| ||||||    
T  3420049 atca-ccccaacaagcacccg 3420068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 10243933 - 10243848
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | | ||||| |||||||||||||| || ||| ||||||| |||||||||||| | |||| |||||    
T  10243933 acaagagctagtgacgacgaacatgtacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaaacatcggccttctcac 10243848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 37123234 - 37123050
Alignment:
Q  47 ggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatac 146  Q
    ||||||| |||| | || ||||| ||||||||  | | ||||| || ||||||| |||||||||||||||||| |||||||||| ||||||||  || ||    
T  37123234 ggtgcaaacaaccagcagatcaaaaggaaaagactcaactcaatggaacccgcttcctccaaacaccctaaactccttaacaaccccaaaaaacacaaac 37123135  T
Q  147 aaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    || ||||||| |||||||| ||||||||||||| ||||||  |||||| ||||||||||||| ||||||||||| ||||||||||    
T  37123134 aagagctagtgacgacgaacaaggacccgagtaccagaggccgcctccgaaagaaatcaccctcaacaaacacctgcctcctcac 37123050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 14193784 - 14193596
Alignment:
Q  44 ggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgca 143  Q
    ||||||| || ||| |||| |||||| |||||||||   | ||||||||||| |||| |||||||| |||||||||||||||||||| |||||||  ||     
T  14193784 ggtggtgtaaacaagaaacgaatcaaaaggaaaaggcacaactcaacgggactcgcttcctccaaaaaccctaaacaccttaacaaccccaaaaatcgcg 14193685  T
Q  144 tacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc-cccaacaaacacccgcctcctcac 231  Q
     |||| ||||||| ||||||||||||||||||||||||| |||   ||||| |||  ||||||| ||||  ||||||||| ||||||||    
T  14193684 aacaagagctagtgacgacgaataaggacccgagtaacaaaggcaacctcccaaatgaatcacctcccacaaaacacccgtctcctcac 14193596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 4464156 - 4464358
Alignment:
Q  28 aaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaac 127  Q
    ||||||||||||||| |||||||||| ||||||||  ||||| ||||||| | | |||  || || ||||||| ||||||||| || ||||||||| |||    
T  4464156 aaacgacaagataagcggtggtgcaaacaacaaaccgatcaaaaggaaaaagctcagcagaaaggaacccgct-cctccaaactccataaacacctaaac 4464254  T
Q  128 aactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctc-caaaagaaatcacccccaacaaacacccgcctc 226  Q
    ||| |||||||| ||| |||||||||||| ||||| || |||||| | | ||||||||   |||||  ||||||||||| ||||| |||||||||||||     
T  4464255 aaccccaaaaaacgcaaacaaaagctagtgacgacaaacaaggactccattaacagagtcagcctctaaaaagaaatca-ccccatcaaacacccgccta 4464353  T
Q  227 ctcac 231  Q
    |||||    
T  4464354 ctcac 4464358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 25647528 - 25647341
Alignment:
Q  45 gtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcat 144  Q
    ||||||||| |||||||||  |||| |||||||||   | ||||||||||| |||| |||||||||||||||||||||||||||||   |||||   |      
T  25647528 gtggtgcaaacaacaaacaggtcaaaaggaaaaggcacaactcaacgggactcgcttcctccaaacaccctaaacaccttaacaaccttaaaaatcacga 25647429  T
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc-cccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| |||||||||||||||| |||   ||||| |||  ||||||| ||||  ||||||||||||||||||    
T  25647428 acaagagctagtgacgacgaacaaggacccgagtaacaaaggcaacctcccaaatgaatcaccacccacaaaacacccgcctcctcac 25647341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 47235551 - 47235376
Alignment:
Q  55 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 154  Q
    ||||||||||||||| ||||||||| | | | ||||| ||| |||  ||||||||| || ||||||||| ||| || | ||||||  || |||| |||||    
T  47235551 caacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaactccgtaaacacctaaaccacccaaaaaaacacaaacaagagcta 47235452  T
Q  155 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |  |||| ||| | ||||||| |||||| ||||||| || ||| ||||||| ||||||| ||||||| |||||||||    
T  47235451 gagacgatgaacatggacccgtgtaacaaaggttgcttctaaaggaaatca-ccccaaccaacacccacctcctcac 47235376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 14755543 - 14755688
Alignment:
Q  88 aacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggt 187  Q
    |||| ||| |||| ||||||||||||||||   |||||||||  |||| |||  || |||| ||||||| |||||| |||  ||| ||||||||||| ||    
T  14755543 aacgagactcgcttcctccaaacaccctaa---ccttaacaatcccaacaaacacaaacaagagctagtgacgacggatacagacacgagtaacagaagt 14755639  T
Q  188 tgcctccaaaag--aaatcacccccaacaaacacccgcctcctcacata 234  Q
    |||||||||| |  ||| |||||||||||||||||| |||||| |||||    
T  14755640 tgcctccaaacggaaaaacacccccaacaaacaccctcctcctgacata 14755688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 208
Target Start/End: Complemental strand, 20611614 - 20611466
Alignment:
Q  59 aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaa 158  Q
    ||||||||||| ||||||||| | | | ||||| ||| |||  |||||||||  | ||||||||| ||| || |||||||   || |||| |||||||||    
T  20611614 aaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaacttcgtaaacacctaaactac-ccaaaaagcacaaacaagagctagtaa 20611516  T
Q  159 cgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcaccc 208  Q
    |||| || | ||||||| |||||||||||||| || ||| ||||||||||    
T  20611515 cgacaaacatggacccgtgtaacagaggttgcttctaaaggaaatcaccc 20611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 19176249 - 19176168
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcc 227  Q
    |||| ||||||| |||| ||| || |||||| |||||| ||||| | |||||| ||||||| ||||||||| |||||||||||    
T  19176249 acaagagctagtgacgatgaacaaagacccgtgtaacaaaggttacttccaaaggaaatca-ccccaacaagcacccgcctcc 19176168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 34476046 - 34476173
Alignment:
Q  102 cctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaa 201  Q
    ||||||||| || ||||||||| ||| |||| |||||   || |||| ||||||  |||||||| | ||||||| |||||| ||||||| |   || |||    
T  34476046 cctccaaactccgtaaacacctaaaccactc-aaaaagcacaaacaagagctagagacgacgaacatggacccgtgtaacataggttgctttttaaggaa 34476144  T
Q  202 atcacccccaacaaacacccgcctcctcac 231  Q
    |||||||| ||||||||||| |||||||||    
T  34476145 atcacccc-aacaaacacccccctcctcac 34476173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 45163581 - 45163509
Alignment:
Q  158 acgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||||||| | ||||||| |||||| || |||| || ||| ||||||||||| |||| ||||||||||||||||    
T  45163581 acgacgaacatggacccgtgtaacaaagattgcttctaaaggaaatcacccc-aacatacacccgcctcctcac 45163509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 26046164 - 26046385
Alignment:
Q  9 agcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaa 108  Q
    |||||| || ||||| ||||||||||| |||| | |||||||||| ||||||||| ||||| || | |||| | ||  ||||  |||||||| |||| ||    
T  26046164 agcacacaaaaagtatgacaaacgacatgatatgcggtggtgcaaacaacaaacatatcaaaagaagaaggctcagtgcaacatgacccgcttcctctaa 26046263  T
Q  109 acaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcaccc 208  Q
    ||||||||||||||| ||  || |||||||   || |||| ||||||| | |||||| ||||||||||||||||||||  | ||||||||||||||| ||    
T  26046264 acaccctaaacacctaaaacaccccaaaaaca-caaacaagagctagtgaagacgaacaaggacccgagtaacagaggcagtctccaaaagaaatcaacc 26046362  T
Q  209 ccaacaaacacccgcctcctcac 231  Q
    ||||||||||||||||| |||||    
T  26046363 ccaacaaacacccgcctactcac 26046385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 13954449 - 13954653
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacacctt 124  Q
    ||||||||||| |||||| || ||||||| ||||||||  | ||| ||| |||||  ||| || ||||| ||  || |||||||||||||||||||||||    
T  13954449 gacaaacgacatgataagcggcggtgcaaacaacaaaccgaccaaaaggtaaaggcatagttccacggg-ccaactccctccaaacaccctaaacacctt 13954547  T
Q  125 aacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcc 224  Q
    ||||||||| | ||| ||| |||| ||||||| |||||||| || |||| || ||||| | |   |||||| | |||||||||||||||||||||||| |    
T  13954548 aacaactcc-agaaacgcaaacaagagctagtgacgacgaacaaagacctgaataacaaacgcaacctccagaggaaatcacccccaacaaacacccgtc 13954646  T
Q  225 tcctcac 231  Q
    |||||||    
T  13954647 tcctcac 13954653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 7195475 - 7195662
Alignment:
Q  44 ggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgca 143  Q
    |||||||||| ||||||||| || || |||||||||   ||| |||  |||| |||| ||||||||||||||||||||||||| ||| | ||| |||| |    
T  7195475 ggtggtgcaaacaacaaacatataaaaaggaaaaggcccagcacaaaaggacacgcttcctccaaacaccctaaacaccttaataacccaaaacaatgta 7195574  T
Q  144 tacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
     |||| ||||||| || || || |||||||||||||||| | |  | ||  |||||||||||||  ||| ||||||| ||||||||||    
T  7195575 aacaagagctagtgacaacaaacaaggacccgagtaacataagcagtctataaaagaaatcacctacaataaacacctgcctcctcac 7195662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 8297350 - 8297148
Alignment:
Q  8 cagcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcca 107  Q
    |||| ||||| ||||| |||||| || |||||  | | |||||||| ||||||||||||||| || |||| | | |||| ||||||||||| | ||||      
T  8297350 cagcgcagaaaaagtatgacaaatgagaagatgcgcgatggtgcaaacaacaaacaaatcaaaagaaaaatgctcagctaaacgggacccgattcctc-- 8297253  T
Q  108 aacaccctaaacaccttaacaactccaaaaaa-tgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcac 206  Q
           |||||||||||||||| |||||||| |||| ||||  |||||| | |||||| |||||| |||||||||||||   ||||||||| |||| ||    
T  8297252 -------taaacaccttaacaaccccaaaaaaatgcaaacaagtgctagtgatgacgaacaaggactcgagtaacagaggcaacctccaaaataaattac 8297160  T
Q  207 ccccaacaaaca 218  Q
     |||||||||||    
T  8297159 tcccaacaaaca 8297148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 14302629 - 14302760
Alignment:
Q  8 cagcacagaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcca 107  Q
    ||||||| || ||| | |||||||||||  ||| |  ||||||||| ||||||| | ||||| | ||||| | | | |||||||||||||||| ||||||    
T  14302629 cagcacacaaaaagaatgacaaacgacataatatgatgtggtgcaaacaacaaatagatcaaaacgaaaatgctcaactcaacgggacccgcttcctcca 14302728  T
Q  108 aacaccctaaacaccttaacaactccaaaaaa 139  Q
    |||| | ||||||||| |||||| ||||||||    
T  14302729 aacatcttaaacacctaaacaaccccaaaaaa 14302760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 29087350 - 29087211
Alignment:
Q  88 aacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggt 187  Q
    |||||||| |||  ||||||||| || ||||||||| ||| || ||||||||  || |||| ||||||| |||||||| | ||||||  |||||||||||    
T  29087350 aacgggacacgcatcctccaaactccgtaaacacctaaaccac-ccaaaaaacacaaacaagagctagtgacgacgaacatggacccatgtaacagaggt 29087252  T
Q  188 tgcctccaaaagaaatcacccccaacaaacacccgcctcctc 229  Q
    ||| |||| |  |||||| ||||||| |||||| ||||||||    
T  29087251 tgcttccatagaaaatca-ccccaaccaacacctgcctcctc 29087211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 24072564 - 24072671
Alignment:
Q  110 caccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccc 209  Q
    ||||||||||||||||||||| ||||||  |  | |||| ||||||  || ||||||| |||||||| |||||||||  ||||| ||||||||||||||     
T  24072564 caccctaaacaccttaacaac-ccaaaactt--aaacaagagctagcgacaacgaatatggacccgaataacagaggcggcctctaaaagaaatcaccca 24072660  T
Q  210 caacaaacacc 220  Q
    |||||| ||||    
T  24072661 caacaaccacc 24072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 7392322 - 7392440
Alignment:
Q  102 cctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaat-aaggacccgagtaacagaggttgcctccaaaaga 200  Q
    ||||||| |||||| ||||| |||||||| |  ||||| ||| |||| ||||||| ||||||||  || ||| |||||||| ||||   |||||| ||||    
T  7392322 cctccaagcaccctcaacacattaacaacccacaaaaacgcaaacaagagctagtgacgacgaaacaatgactcgagtaaccgaggcatcctccagaaga 7392421  T
Q  201 aatcacccccaacaaacacc 220  Q
    ||||| ||||||||||||||    
T  7392422 aatca-ccccaacaaacacc 7392440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 9313487 - 9313653
Alignment:
Q  71 aggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactcc--aaaaaatgcatacaaaagctagtaacgacgaataa 168  Q
    ||||||||| | |||| ||||||||  ||| |||||||||||| ||||||||||| |||| ||  |||||| |||||||| ||||| | ||||| || ||    
T  9313487 aggaaaaggctcagcttaacgggactagcttcctccaaacaccataaacaccttagcaacccccaaaaaaacgcatacaagagctattgacgacaaacaa 9313586  T
Q  169 ggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacatat 235  Q
    |||||| ||||||| ||| ||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  9313587 ggacccaagtaacaaaggctgccttcaaaagaaatcacccccaacaaacgccctcctcctcacatat 9313653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 10785583 - 10785748
Alignment:
Q  65 atcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacga 164  Q
    ||||| ||||||||| | ||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |||| ||||  | |||| |||||||    
T  10785583 atcaaaaggaaaaggctcagctcaatgggacctgctccctccaaacaccctaaacaccttaacaaccccaaaaa-tgcaaacaagggttagtgacgacga 10785681  T
Q  165 ata-aggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctca 230  Q
    |   | ||||| |||||||||||  |||||||||||||||||||||||| ||||||  |||||||||    
T  10785682 aaccaagacccaagtaacagaggcagcctccaaaagaaatcacccccaataaacacttgcctcctca 10785748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 27102096 - 27101970
Alignment:
Q  94 acccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctc 193  Q
    ||||||| |||||||||||||||||||||||||||||           || |||| |||| || |||||||| ||||||||||||||||||||  |||||    
T  27102096 acccgcttcctccaaacaccctaaacaccttaacaac-----------caaacaagagctcgtgacgacgaagaaggacccgagtaacagaggccgcctc 27102008  T
Q  194 caaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||||||||  |||| ||||| ||||||||||||||||    
T  27102007 caaaagaaaataccctcaacagacacccgcctcctcac 27101970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 52278363 - 52278166
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacacctt 124  Q
    ||||||||||| |||||| ||||||| || ||||||||||||||| | ||| ||| | | ||||||||||| |    ||||||  | || ||||||||||    
T  52278363 gacaaacgacatgataagcggtggtgaaaacaacaaacaaatcaaaatgaataggctcatctcaacgggacac----cctcca--ctccataaacacctt 52278270  T
Q  125 aacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcc 224  Q
    |||||| |  ||||| ||  |||| |||||||||||||||| | ||||||| | |||| ||| | ||||||||  |||||| |||||||||||||| |||    
T  52278269 aacaaccc--aaaaacgccaacaagagctagtaacgacgaacatggacccgtgaaacaaaggcttcctccaaagaaaatca-ccccaacaaacacctgcc 52278173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 7857454 - 7857344
Alignment:
Q  87 caacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagagg 186  Q
    ||||||||| | || ||||||||||||||||||||||| ||||| || ||| | ||| |||| ||||||| |||||||| | |||||||||||||||||     
T  7857454 caacgggacacactccctccaaacaccctaaacaccttgacaac-cccaaagacgcaaacaagagctagtgacgacgaacatggacccgagtaacagagc 7857356  T
Q  187 ttgcctccaaaa 198  Q
      ||||||||||    
T  7857355 cagcctccaaaa 7857344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 46693154 - 46693239
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | | ||||| |||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||    
T  46693154 acaagagctagtgacgacgaacatgtacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaaacacccacctcctcac 46693239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 24684811 - 24684899
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacata 234  Q
    |||| ||||||| |||| ||| ||||||||  |||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||||||    
T  24684811 acaagagctagtgacgatgaacaaggacccatgtaacataggttgcttccaaaggacatcacccc-aacaaccacccgcctcctcacata 24684899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 16147341 - 16147229
Alignment:
Q  116 aaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaa 215  Q
    ||||||||||||||| |  ||||| ||| | || ||||||| |||||||| | || |||| |||||||||| |||||||||| ||||||| ||||||  |    
T  16147341 aaacaccttaacaaccc--aaaaacgcaaataagagctagtgacgacgaacatgggcccgtgtaacagaggctgcctccaaaggaaatca-ccccaagca 16147245  T
Q  216 acacccgcctcctcac 231  Q
    |||||| |||||||||    
T  16147244 acacccacctcctcac 16147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 31586096 - 31586181
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||| ||| |||||||| | ||||||| |||||||||||| | || ||| ||||||| ||||||||| ||||| |||||||||    
T  31586096 acaagagccagtgacgacgaacatggacccgtgtaacagaggtttcttctaaaggaaatca-ccccaacaagcacccacctcctcac 31586181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 50589554 - 50589608
Alignment:
Q  163 gaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaac 217  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| ||||||||    
T  50589554 gaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaaac 50589608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 57985 - 57852
Alignment:
Q  98 gctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaa 197  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| |||  ||||||| |||||||| ||||||  |||| |||||||| |||||||||    
T  57985 gctacctccaaacaccctaaacaccttaacaac-ccaaaaaacgcaaacatgagctagtgacgacgaacaaggacatgagttacagaggtagcctccaaa 57887  T
Q  198 agaaatca-cccccaacaaacacccgcctcctcac 231  Q
    ||||| || |||||||||||||||| |||||||||    
T  57886 agaaaccaccccccaacaaacacccacctcctcac 57852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 36571 - 36362
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa-cacct 123  Q
    |||||| |||| |||| | |||||||||| ||||||||| ||||| ||||||||    ||||||||| || ||||| |||| |||||||||||| |||||    
T  36571 gacaaatgacatgatatgcggtggtgcaaacaacaaacatatcaaaaggaaaagtcacagctcaacgagatccgcttcctctaaacaccctaaaacacct 36472  T
Q  124 taacaactccaaaaaat-gcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc-cccaacaaacaccc 221  Q
    ||||||| ||||||||  |   |||| ||||| | |||||||| ||||||||||||||||||||   ||||| |||||||||||| ||||  |||||||     
T  36471 taacaaccccaaaaaaacgtgaacaagagctactgacgacgaacaaggacccgagtaacagaggcaacctcccaaagaaatcaccacccacaaaacacct 36372  T
Q  222 gcctcctcac 231  Q
    ||||||||||    
T  36371 gcctcctcac 36362  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 22811410 - 22811490
Alignment:
Q  59 aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaa 139  Q
    ||||| ||||| ||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||  |||||||    
T  22811410 aaacatatcaaaaggaaaaggcttagatcaacgggacccgcttcctccaaactccctaaacaccttaacaaccacaaaaaa 22811490  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 19672966 - 19672763
Alignment:
Q  25 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaaca-ccctaaacacct 123  Q
    ||||||| ||| |||| | |||||||||| | |||||||| |||| ||||||||| | | ||||||| ||| |||  || |||||   ||||||||||||    
T  19672966 gacaaacaacatgatatgcggtggtgcaaacgacaaacaa-tcaaaaggaaaaggctcatctcaacgagacacgcaccccccaaaattccctaaacacct 19672868  T
Q  124 taacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgc 223  Q
    ||||||| |||||||   || |||| |||||||  ||||||| | ||| ||| ||||| |||| |||||||||| ||||||||||  |||||||||||||    
T  19672867 taacaac-ccaaaaacacca-acaagagctagtggcgacgaacatggatccgtgtaacggaggatgcctccaaaggaaatcaccca-aacaaacacccgc 19672771  T
Q  224 ctcctcac 231  Q
    ||||||||    
T  19672770 ctcctcac 19672763  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 30964276 - 30964104
Alignment:
Q  55 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 154  Q
    ||||||||||||||| ||||||||||| | | ||||| ||| |||  ||||||||| ||  |||||||| ||| || |||||||   || |||| |||||    
T  30964276 caacaaacaaatcaaaaggaaaaggttcaacacaacgtgacacgcaccctccaaactccgcaaacacctaaaccac-ccaaaaagcacaaacaatagcta 30964178  T
Q  155 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctc 229  Q
    || |||||||| | ||||||| |||||||||||||| |  ||| || |||| ||||||||| ||||| |||||||    
T  30964177 gtgacgacgaacatggacccgtgtaacagaggttgcttttaaaggatatca-ccccaacaagcacccacctcctc 30964104  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 38639638 - 38639831
Alignment:
Q  37 gataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaa 136  Q
    |||||| |||||||||||||||||| | ||||| ||||||||| |  || ||| ||||| |||   |||| |||||| |||||||||||| | |   |||    
T  38639638 gataagcggtggtgcaagcaacaaaaagatcaaaaggaaaaggctcggcacaaagggactcgcattctcccaacaccttaaacaccttaa-acccaaaaa 38639736  T
Q  137 aaatgcata-caaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    ||| ||| | ||| || |||| |||||||| ||||| ||||||||||||||  |||| | | |||||||||| |||||||||| || |||||||||    
T  38639737 aaacgcaaaacaagagttagtgacgacgaacaaggatccgagtaacagaggcagcct-ctacagaaatcacctccaacaaacatccacctcctcac 38639831  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 8254773 - 8254688
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  8254773 acaagagctagtgacgacgaacatggacccgtgtaacaaaggttgcttccaaagaaaatctcccc-aacaagcacccgcctcctcac 8254688  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 8268191 - 8268106
Alignment:
Q  145 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 231  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  8268191 acaagagctagtgacgacgaacatggacccgtgtaacaaaggttgcttccaaagaaaatctcccc-aacaagcacccgcctcctcac 8268106  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 25753035 - 25752942
Alignment:
Q  27 caaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagct-caacgggacccgctacctccaaacaccctaaac 119  Q
    |||||||||  ||| ||||| |||||| ||||||| | ||||| ||||||||||| | || ||||  |||||||| | ||||||||||||||||    
T  25753035 caaacgacataatatgtggttgtgcaaacaacaaatatatcaaaaggaaaaggttcaactccaacatgacccgcttcttccaaacaccctaaac 25752942  T

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Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 19252 - 19167
Alignment:
Q  20 agtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctc 105  Q
    |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| | ||||||| |||||| ||| ||||    
T  19252 agtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatctaaaggaaaaggctcagctcaatgggaccggctccctc 19167  T

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