View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_low_2 (Length: 500)
Name: NF3255_low_2
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 2930569 - 2931058
Alignment:
| Q |
1 |
cctcatcctgacatcccacaccctccctcttaaacccatcaagacctatcccaattaccccgtctctatcttcttcatcccactggaaactcatattccc |
100 |
Q |
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|||||| |||| |||||| | ||| ||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2930569 |
cctcatactgaaatcccaaagccttcctcttaaaaccatcaagagctatctcaattaacccgtctctatcttcttcatcccaccggaaactcatattccc |
2930668 |
T |
|
| Q |
101 |
tggtgagtcccagttctccatcgccggaaactcattctccgaagaactatccgaatcagactcaggataataacgtgacagtgaagagtgtctcaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2930669 |
gggtgagtcccagttctccatcgccggaaactcattctccgaagaactatccgaatcagactcaggataataacgtgacagtgaagagtgtctcaaaatt |
2930768 |
T |
|
| Q |
201 |
ccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcatatataacctccaatggtgctttcacgttccattcaacaaaagactcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2930769 |
ccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcatatataacatccaatggtgctttcacgttccattcaacaaaagactcat |
2930868 |
T |
|
| Q |
301 |
caagaaacgaatttgattcaaaacccatttttgatttcaacttttcttcataatttctcgagacccacttgtaaatttggtcaagagaatcattttcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2930869 |
caagaaacgaatttgattcaaaacccatttttgatttcaacttttcttcataatttctcgagacccacttgtaaatttggtcaagagaatcattttcctc |
2930968 |
T |
|
| Q |
401 |
tgttttcccctgtttttcatctccgttttcttctttggtaacggattctaattcaccaaatttttccttttcttcactcttagatctctg |
490 |
Q |
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| T |
2930969 |
tgttttcccctgtttttcatctctgttttcttcattggtaacggattctaattcaccaaatttttccttttcttcactcttagatctctg |
2931058 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 36117473 - 36117417
Alignment:
| Q |
124 |
ccggaaactcattctccgaagaactatccgaatcagactcaggataataacgtgaca |
180 |
Q |
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|||||||||||| |||||| || |||||||||||||| || ||||| |||||||||| |
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| T |
36117473 |
ccggaaactcatcctccgaggagctatccgaatcagattccggatagtaacgtgaca |
36117417 |
T |
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