View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_low_3 (Length: 448)
Name: NF3255_low_3
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 34472143 - 34471935
Alignment:
| Q |
17 |
acatggcgactcaaagatcattgtagacatgatcgctgataaccttaagttcaatgttcatactccaattttggttcatgaatcgaaagttgcttagttc |
116 |
Q |
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| T |
34472143 |
acatggcgactcaaagatcattatagacatgatcgctgataaccttaagttcaatgttcatactccaattttgattcatgaatcgaaagttgcttagttc |
34472044 |
T |
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| Q |
117 |
aagatggctggtgcaaataaaccatacctaatgtaagcatatagagatgtccgtttattttcttaggtttcttttttcttgagcaatgtccttttttgta |
216 |
Q |
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| T |
34472043 |
aagatggctggtgcaaataaaccatacctaatgtaagcatatagaaatgtccgtttattttctta-gtttcttttttcttgagcaatgtccttttttgta |
34471945 |
T |
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| Q |
217 |
tgaaaaataa |
226 |
Q |
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|||||||||| |
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| T |
34471944 |
tgaaaaataa |
34471935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 421
Target Start/End: Complemental strand, 34471643 - 34471442
Alignment:
| Q |
228 |
aatttatttatgacatttgtgcatatttgattattcacatatataatgtccttgggagtttaaatcaattgctaatgacaatgcaaaatacatgtaaggt |
327 |
Q |
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||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
34471643 |
aatttatttatgaaacttgtgcatatttgactattcacatatataatgtccttgtgagtttaactcaattggtaatgacaatgcaaaatatatgtaaggt |
34471544 |
T |
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| Q |
328 |
ctgggattttccggccatcggtgttcaaactctgaccatcac--------nnnnnnngtcacatatataacattttttgcagggacaatccttatttatt |
419 |
Q |
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||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34471543 |
ctggggttttccggccatcgatgttcaaactctggccatcacaaaaaaaaataaaaattcacatatataacattttttgtagggacaatccttatttatt |
34471444 |
T |
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| Q |
420 |
ta |
421 |
Q |
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|| |
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| T |
34471443 |
ta |
34471442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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