View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3255_low_4 (Length: 439)
Name: NF3255_low_4
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 424
Target Start/End: Original strand, 25802664 - 25803082
Alignment:
| Q |
6 |
agtgagatgaaaattgcaaatttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctca |
105 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25802664 |
agtgagatgaaaattgcaattttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagtatacaactccatctca |
25802763 |
T |
|
| Q |
106 |
tgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacc |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25802764 |
tgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacc |
25802863 |
T |
|
| Q |
206 |
ctatcaattccggatcctcagccaatgcaccttttacctcaacaaccacggtactgtaatcatcaaaacactctctgatgggatcagaagaaggatattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25802864 |
ctatcaattccggatcctcagccaatgctccttttacctcaacaaccacggtactgtaatcatcaaaacactctctgatgggatcagaagaaggatattt |
25802963 |
T |
|
| Q |
306 |
ttcggtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaa |
405 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802964 |
ttcagtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaa |
25803063 |
T |
|
| Q |
406 |
gtgatttgagggtaagatt |
424 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
25803064 |
gtgatttgagggtaagatt |
25803082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 420
Target Start/End: Original strand, 23914625 - 23915019
Alignment:
| Q |
26 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
125 |
Q |
| |
|
||||||||| |||||||||| || ||| ||||||| ||| | ||||||| |||||||||| ||| |||| |||||||||||||| ||||||||||| |
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|
| T |
23914625 |
tttattcatgaaatataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23914724 |
T |
|
| Q |
126 |
agaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctca |
225 |
Q |
| |
|
||| |||||||| |||||||| |||||||||| ||| ||| | | | |||||||| ||||||| ||| | |||| |||| | ||||| || ||| |
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| T |
23914725 |
agacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtccggttcttca |
23914824 |
T |
|
| Q |
226 |
gccaatgcaccttttacctcaacaaccacggtactgtaatcatcaaaacactctctgatgggatcagaagaaggatatttttcggtaatttctctgacta |
325 |
Q |
| |
|
||||||| |||||| | | ||||||| || | ||||||| | ||| ||| ||||||| | ||||||||||||||||| |||||||| | ||| |
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|
| T |
23914825 |
atcaatgcaacttttaattgaccaaccacactattataatcattagcacattctttgatgggttgagaagaaggatattttttcataatttctttaactt |
23914924 |
T |
|
| Q |
326 |
cttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggtaa |
420 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||| |
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|
| T |
23914925 |
gttgttgggattttattgccttccctattgccgcaatctttaaaaatgacctgcaaaaggtaagataatctttgatcaaagtaattggagggtaa |
23915019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 26 - 421
Target Start/End: Original strand, 23922262 - 23922657
Alignment:
| Q |
26 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
125 |
Q |
| |
|
||||||||| ||||||||||| || ||| ||||||| ||||| ||||||| |||||||||| ||| |||| |||||||||||||| ||||||||||| |
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|
| T |
23922262 |
tttattcatgaaatataaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23922361 |
T |
|
| Q |
126 |
agaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctca |
225 |
Q |
| |
|
||| |||||||| |||||||| |||||||||| ||| ||| | | | |||||||| ||||||||||| | |||| |||| ||||| || ||| |
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|
| T |
23922362 |
agacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcatcactagcatatttgatatccaagtctatagtgtccggttcttca |
23922461 |
T |
|
| Q |
226 |
gccaatgcaccttttacctcaacaaccacggtactgtaatcatcaaaacactctctgatgggatcagaagaaggatatttttcggtaatttctctgacta |
325 |
Q |
| |
|
||||||| |||||| | | ||||||| || | |||||||||| ||| ||| |||| || | ||||||||||||||||| |||||||| | ||| |
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|
| T |
23922462 |
atcaatgcaacttttaattgaccaaccacactattataatcatcaacacattctttgattggttgagaagaaggatattttttcataatttctttaactt |
23922561 |
T |
|
| Q |
326 |
cttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggtaag |
421 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| || ||||||||||||||||| |||||| ||||||||||| |||||||| |||| ||||||| |
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|
| T |
23922562 |
gttgttgggattttactgccttctttattgccgcattctttaaaaatgacctgacaaaggtaagataatcttcaatcaaagtaattttggggtaag |
23922657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24435842 - 24435898
Alignment:
| Q |
112 |
agtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcac |
168 |
Q |
| |
|
||||||| || ||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24435842 |
agtgtagaaagggaagaagtattaacaatcttttcattaactaagctatgttcgcac |
24435898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 24436021 - 24436127
Alignment:
| Q |
291 |
agaagaaggatatttttcggtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttaga |
390 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||| ||||||| |||| |||| || ||||||||||||||| |||||||| | || |||| |||||| |
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|
| T |
24436021 |
agaagaaggatactttttcttcatttctttgacttgatgttgggcttttgttgcattctctattgccacaatccttaaaaataatcttgaaaaagttaga |
24436120 |
T |
|
| Q |
391 |
taatctt |
397 |
Q |
| |
|
||||||| |
|
|
| T |
24436121 |
taatctt |
24436127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 23995388 - 23995320
Alignment:
| Q |
351 |
tattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggta |
419 |
Q |
| |
|
||||||||||||||||| | || | ||| |||| || |||||||||||| || |||| ||||||||||| |
|
|
| T |
23995388 |
tattgccacaatctttagatataatctggaaaatgtaagataatcttcggtcgaagtaatttgagggta |
23995320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 41 - 421
Target Start/End: Original strand, 35074353 - 35074733
Alignment:
| Q |
41 |
taaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaat |
140 |
Q |
| |
|
||||||| || ||| ||||||| ||||| |||||||||||||||| | || |||| ||| ||||||||||||| | ||||||||||| |||| ||||| |
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|
| T |
35074353 |
taaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaat |
35074452 |
T |
|
| Q |
141 |
cttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcacctttt |
240 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| | |||||| | |||||| |||||||||| | ||||| ||||||||||||| ||||||||||| | |
|
|
| T |
35074453 |
cttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcataattgacagccatgcttatcatttccggatcctcacgcaatgcaccttgt |
35074552 |
T |
|
| Q |
241 |
acctcaacaaccacggtactgtaatcatcaaaacactctctgatgggatcagaagaaggatatttttcggtaatttctctgactacttgttgggatttta |
340 |
Q |
| |
|
||||| | |||||| ||| |||||||||| ||| ||| ||||||| | ||||||||||||||| | |||| ||| | ||| |||||||||||||| |
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|
| T |
35074553 |
acctcgataaccaccgtattgtaatcatccccacattctttgatgggttgagaagaaggatatttgttcataatctctttaacttgttgttgggatttta |
35074652 |
T |
|
| Q |
341 |
ttgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggtaag |
421 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35074653 |
ctgccttctctattgccacaatctttaaaaatgacctgcaaaaagttagataatcttcgatcaaagtaatttgagggtaag |
35074733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 56 - 421
Target Start/End: Original strand, 35079337 - 35079702
Alignment:
| Q |
56 |
atagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaa |
155 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| | ||||||| |||||||||||||| || ||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
35079337 |
atagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttagccaa |
35079436 |
T |
|
| Q |
156 |
gctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcaccttttacctcaacaaccacg |
255 |
Q |
| |
|
||||||||| |||||||| | |||||| | |||||||||||||||||| | ||||| |||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
35079437 |
gctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcatttccggatcctcgcgcaatgcaccttgtacctcgctaaccacc |
35079536 |
T |
|
| Q |
256 |
gtactgtaatcatcaaaacactctctgatgggatcagaagaaggatatttttcggtaatttctctgactacttgttgggattttattgccttgtctattg |
355 |
Q |
| |
|
||| ||||||||||| || ||| |||| || | ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| | ||||| |
|
|
| T |
35079537 |
gtattgtaatcatcaccgcattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattg |
35079636 |
T |
|
| Q |
356 |
ccacaatctttaaaaatgacctgcaaaaggttagataatcttcgatcaaagtgatttgagggtaag |
421 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |||||| || |||| |||||||| |
|
|
| T |
35079637 |
ccacagtctttaaaaaggacctgcaaaaggttagataatctttgatcaaggtaattttagggtaag |
35079702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 13436259 - 13436196
Alignment:
| Q |
97 |
tccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctac |
160 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
13436259 |
tccatctcactattcattgtagaaatggaagaaatattaaaaatcttttcattaactaagctac |
13436196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 13436071 - 13435966
Alignment:
| Q |
291 |
agaagaaggatatttttcggtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgcaaaaggttaga |
390 |
Q |
| |
|
|||||| |||||||||| || |||||| ||||| |||||| |||| |||| || ||||||||||||||| |||||||| | || ||||||| ||| |
|
|
| T |
13436071 |
agaagagggatattttttcgtcatttctttgactttatgttggacttttgttgcattatctattgccacaatccttaaaaataatcttgaaaaggtaaga |
13435972 |
T |
|
| Q |
391 |
taatct |
396 |
Q |
| |
|
|||||| |
|
|
| T |
13435971 |
taatct |
13435966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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