View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3255_low_6 (Length: 331)

Name: NF3255_low_6
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3255_low_6
NF3255_low_6
[»] chr2 (1 HSPs)
chr2 (57-314)||(37358955-37359212)
[»] chr8 (1 HSPs)
chr8 (26-58)||(11165482-11165514)
[»] chr7 (3 HSPs)
chr7 (26-58)||(17869192-17869224)
chr7 (26-58)||(29001708-29001740)
chr7 (29-61)||(40804977-40805009)
[»] chr5 (1 HSPs)
chr5 (26-58)||(17674163-17674195)
[»] chr4 (1 HSPs)
chr4 (23-59)||(51434169-51434205)
[»] chr3 (1 HSPs)
chr3 (26-58)||(47895253-47895285)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 57 - 314
Target Start/End: Complemental strand, 37359212 - 37358955
Alignment:
Q  57 tagaatgcattgtccttaccaatgaaccaagttcaaagagacaaatcacttggatgttattagagtcatttttaatatgtgtgaagttaagtaattttgc 156  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37359212 tagaatgcattgtccctaccaatgaaccaagctcaaggagacaaatcaattggatgttattagactcatttttaatatgtgtgaagttaagtaattttgc 37359113  T
Q  157 ttataaataagatagaaagggttactcgttacaccaaatcactaaattgactgaatccatctgaaccgagctacccatatactccatacaaacaaaattt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37359112 ttataaataagatagaaagggttactcgttacaccaaatcactaaattgactgaatccatctgaaccgagctacccatatactccatacaaacaagattt 37359013  T
Q  257 ggacacacttgtgttaaaaataaaatattagagttagttttgggtgcaatgaagaaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37359012 ggacacacttgtgttaaaaataaaatattagagttagttttgggtgcaatgaagaaat 37358955  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 11165514 - 11165482
Alignment:
Q  26 taaagtgacactcattttaaaacggaggaagta 58  Q
    |||||||||||||||||||||||||||| ||||    
T  11165514 taaagtgacactcattttaaaacggagggagta 11165482  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 17869224 - 17869192
Alignment:
Q  26 taaagtgacactcattttaaaacggaggaagta 58  Q
    |||||||||||||||||||||||||||| ||||    
T  17869224 taaagtgacactcattttaaaacggagggagta 17869192  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 29001708 - 29001740
Alignment:
Q  26 taaagtgacactcattttaaaacggaggaagta 58  Q
    |||||||||||||||||||||||||| ||||||    
T  29001708 taaagtgacactcattttaaaacggatgaagta 29001740  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 40805009 - 40804977
Alignment:
Q  29 agtgacactcattttaaaacggaggaagtagaa 61  Q
    ||||||||||||||||||||||| |||||||||    
T  40805009 agtgacactcattttaaaacggaagaagtagaa 40804977  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 17674195 - 17674163
Alignment:
Q  26 taaagtgacactcattttaaaacggaggaagta 58  Q
    |||||||||||||||||||||||||||| ||||    
T  17674195 taaagtgacactcattttaaaacggagggagta 17674163  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 51434205 - 51434169
Alignment:
Q  23 ggttaaagtgacactcattttaaaacggaggaagtag 59  Q
    |||||||| |||| |||||||||||||||||||||||    
T  51434205 ggttaaagcgacattcattttaaaacggaggaagtag 51434169  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 47895285 - 47895253
Alignment:
Q  26 taaagtgacactcattttaaaacggaggaagta 58  Q
    ||||| |||||||||||||||||||||||||||    
T  47895285 taaagcgacactcattttaaaacggaggaagta 47895253  T

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