View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3255_low_9 (Length: 263)
Name: NF3255_low_9
Description: NF3255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3255_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 5950424 - 5950193
Alignment:
| Q |
11 |
gaacctgtgcaaaattttagctaaaccacaagaaccttctacaagtgaatgtgagaggatgatagagaatcgtatattaacgaggaataagtcactaatt |
110 |
Q |
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| T |
5950424 |
gaaccggtgcaaaattttagctaaaccacaagaaccttctacaagtgaatgtgagaggatgatagagaatcgtatattaacgaggaataagtcactaatt |
5950325 |
T |
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| Q |
111 |
gatatgaggagccaattgcttcaccgatcacttgttgaagagataaacaaaagacggttattcaagacagttggagctgtggaagatattggatatcaaa |
210 |
Q |
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| T |
5950324 |
gatatgaggagccaattacttcaccgatcacttgttgaagaggtaaacaaaagacggttattcaagacagttggagctgtggaagatattggatatcaaa |
5950225 |
T |
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| Q |
211 |
caccttataagattacaagcaaaaagtcacaa |
242 |
Q |
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||||||||||||||| |||||||||||||||| |
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| T |
5950224 |
caccttataagattaaaagcaaaaagtcacaa |
5950193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 31950377 - 31950277
Alignment:
| Q |
118 |
ggagccaattgcttcaccgatcacttgttgaagagataaacaaaagacggttattcaagacagttggagctgtggaagatattggatatcaaacacctta |
217 |
Q |
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||||||||||| | ||| ||||| | ||||| ||| | ||||||||| || | ||||||||||||| |||||||| ||||||||| ||| ||||||| |
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| T |
31950377 |
ggagccaattgttacacagatcattggttgatgagttgaacaaaagaaggcaagtcaagacagttggtgctgtggagaatattggatttcagtcacctta |
31950278 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
31950277 |
t |
31950277 |
T |
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