View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3256_high_2 (Length: 361)
Name: NF3256_high_2
Description: NF3256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3256_high_2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 24948155 - 24948308
Alignment:
| Q |
208 |
tcagtgcatctctcttactatgatcaacaagtaaaagacatcacaaaaaagcacttatatacattaataatcatccagaaaaaccttgattaatatcaaa |
307 |
Q |
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| T |
24948155 |
tcagtgcatctctcttactatgatcatcaagtaaaagacatcacaaaaaagcacttatatacattaataatcatccagaataaccttgattaatatcaaa |
24948254 |
T |
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| Q |
308 |
ttcatcaaatttgagagaatgaaaaataaaaaccttggaaatgatatcaccaac |
361 |
Q |
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| T |
24948255 |
ttcatcaaagttgagagaatgaaaaataaaaaccttggaaatgatatcaccaac |
24948308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 24948308 - 24948155
Alignment:
| Q |
1 |
gttggtgatatcatttccaaggtttttatttttcattctctcaaatttgatgaatttgatattaatcaaggtttttctggatgattattaatgtatataa |
100 |
Q |
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| T |
24948308 |
gttggtgatatcatttccaaggtttttatttttcattctctcaactttgatgaatttgatattaatcaaggttattctggatgattattaatgtatataa |
24948209 |
T |
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| Q |
101 |
gtgcttttttgtgatgtcttttacttgttgatcatagtaagagagatgcactga |
154 |
Q |
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| T |
24948208 |
gtgcttttttgtgatgtcttttacttgatgatcatagtaagagagatgcactga |
24948155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 232 - 361
Target Start/End: Original strand, 24943025 - 24943153
Alignment:
| Q |
232 |
caacaagtaaaagacatcacaaaaaagcacttatatacattaataatcatccagaaaaaccttgattaatatcaaattcatcaaatttgagagaatgaaa |
331 |
Q |
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| T |
24943025 |
caacaagtaaaagacatcacaaaaaagcacttatatacattaataattatccagaaaa-ccttgattaatatcaaattcatcaagtttgagagaatgaaa |
24943123 |
T |
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| Q |
332 |
aataaaaaccttggaaatgatatcaccaac |
361 |
Q |
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| T |
24943124 |
aataaaaaccttggaaatgatatcatcaac |
24943153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24943153 - 24943025
Alignment:
| Q |
1 |
gttggtgatatcatttccaaggtttttatttttcattctctcaaatttgatgaatttgatattaatcaaggtttttctggatgattattaatgtatataa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
24943153 |
gttgatgatatcatttccaaggtttttatttttcattctctcaaacttgatgaatttgatattaatcaagg-ttttctggataattattaatgtatataa |
24943055 |
T |
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| Q |
101 |
gtgcttttttgtgatgtcttttacttgttg |
130 |
Q |
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| T |
24943054 |
gtgcttttttgtgatgtcttttacttgttg |
24943025 |
T |
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