View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3256_high_3 (Length: 360)
Name: NF3256_high_3
Description: NF3256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3256_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 34879175 - 34878824
Alignment:
| Q |
1 |
attacttcctgaaaatgctttctttatgtaatctttctctaaaccaagattttcactcatcatctgagataatgtctctgccacttgaactagtttgtca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34879175 |
attatttcctgaaaatgctttctttatgtaatctttctccaaaccaagattttcactcatcatctgagataatgtctctgccacttgaactagtttgtca |
34879076 |
T |
|
| Q |
101 |
atgtactcatccattgtttgactgcatttacacacacatatggttagaacaacatctccagtttaaaataataaagatacgaaaatgcaaatagcgaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
34879075 |
atgtactcatccattgtttgactgcatttacacacacatattgttagaacaacagctccggtttaaaataataaagatacgaaaatgcaaatagcgaaaa |
34878976 |
T |
|
| Q |
201 |
acacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtttggaattttcctaatgttagacgtcggacgatgccaaatgaagaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34878975 |
acacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtttggaattttcctaatgttagacgtcggacgatgccaaatgaagaatga |
34878876 |
T |
|
| Q |
301 |
actttcccagtcaacatcacaggtgttctcctttttctccaacctctctgct |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34878875 |
actttcccagtcaacatcacaggtgttctcctttttctccaacctctttgct |
34878824 |
T |
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