View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3256_high_4 (Length: 358)
Name: NF3256_high_4
Description: NF3256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3256_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 2467765 - 2468070
Alignment:
| Q |
31 |
ctcacttatatcctcttccattttcccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcgggctacaacg |
130 |
Q |
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| T |
2467765 |
ctcacttatatcctcttccatttttccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcggtctacaacg |
2467864 |
T |
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| Q |
131 |
gtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatga |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467865 |
gtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatga |
2467964 |
T |
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| Q |
231 |
ctctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgataatgatgatgcatccatgacagttttgaagtttatg |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2467965 |
ctctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttc---------tgatgatgcatccatgacagttttgaagtttatg |
2468055 |
T |
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| Q |
331 |
ctgttctctgcgttc |
345 |
Q |
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|||||||| |||||| |
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| T |
2468056 |
ctgttctccgcgttc |
2468070 |
T |
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