View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3256_high_6 (Length: 339)
Name: NF3256_high_6
Description: NF3256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3256_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 47179037 - 47179240
Alignment:
| Q |
12 |
catagggtagatattaggtgactgcagtgacttcaggtttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttctacacattca |
111 |
Q |
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| T |
47179037 |
catagggtagatattaggtgactgcagtgacttcagatttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttct--------- |
47179127 |
T |
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| Q |
112 |
aacacaagttagagaaaaaattgttctcttatatactttggtatcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaa |
211 |
Q |
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| T |
47179128 |
---------tagagaaaaaattgttctcttatatactttggtttcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaa |
47179218 |
T |
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| Q |
212 |
aaatcaattcaagttaaatgag |
233 |
Q |
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| T |
47179219 |
aaatcaattcaagttaaatgag |
47179240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 47179345 - 47179397
Alignment:
| Q |
238 |
acatcatcatcaaagatcatcaaccactactccaaccaccattctaacaaaca |
290 |
Q |
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| T |
47179345 |
acatcatcatcaaagatcatcaaccactactccaaccaccattctaacaaaca |
47179397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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