View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3256_high_8 (Length: 334)
Name: NF3256_high_8
Description: NF3256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3256_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 31154884 - 31155206
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccagaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31154884 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccaaaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
31154983 |
T |
|
| Q |
101 |
taaacaatgtaagaatgttgtaataaaaaacagagatgcaccccgacaaacgtattagtgaatcagaaagcttctcacctttcttgcaattgtgatcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31154984 |
taaacaatgtaagaatgttgtaataaaaaacagagatgctccccgacgaacatattagtgaatcagaaagcttctcacctttcttgcaattgtgatcttg |
31155083 |
T |
|
| Q |
201 |
caaaaatcgatcaactttgtccgcgtgttgacaattgatcattgaagaggaggcttgaacacttgatcgattatttggtttcttgctggcttcggaaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31155084 |
caaaaatcgatcaactttgtccgcgtgttgacacttgatcattgaagaggaggcttgaacacttgattgattatttggtttcttgctggcttcggaaatc |
31155183 |
T |
|
| Q |
301 |
acaaactgagtttcttcaccttt |
323 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
31155184 |
acaaactgagtttcttcatcttt |
31155206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28125763 - 28125862
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccagaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
100 |
Q |
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| T |
28125763 |
aaggtatccaccataaacgcgaacatgtgtgaagaagtactttgcgaacaacacataccataatcaaggaaaatgcaccgccgggatcgaatacgaaatc |
28125862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44962414 - 44962371
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttg |
44 |
Q |
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| T |
44962414 |
aaggtatccaccataaacgtgaacgtgtgtggcgaagaactttg |
44962371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5377760 - 5377661
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccagaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
100 |
Q |
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||||||||||||| ||||| |||||||||||| |||| |||||| |||||||| | |||| |||||| ||||| ||||| || ||||| ||||| ||||| |
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| T |
5377760 |
aaggtatccaccataaacgcgaacatgtgtgaagaagtactttgagaacaacacataccataatcaaggaaaaagcaccgccgggatcgaatacgaaatc |
5377661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 52519642 - 52519543
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccagaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||| |||||| |||||||| | |||| |||||| ||||| ||||| || ||||| ||||| ||||| |
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| T |
52519642 |
aaggtatccaccataaacgcgaacatgtgtgaagaagtactttgagaacaacacataccataatcaaggaaaatgcaccgccgggatcgaatacgaaatc |
52519543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 17450249 - 17450143
Alignment:
| Q |
1 |
aaggtatccaccacaaacgtgaacatgtgtgacgaagaactttgggaacaacatacaccagaatcaaagaaaacgcacctccaggatcaaatacaaaatc |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||| ||||||||||| |||||| ||| | |||| ||||||| | || || ||||| ||||||||||| |
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| T |
17450249 |
aaggtatccaccataaacgtgaacgtgtgtggtgaagaactttgacgacaacacacaacggaattaaagaaatcattccgccgggatcgaatacaaaatc |
17450150 |
T |
|
| Q |
101 |
taaacaa |
107 |
Q |
| |
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| ||||| |
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|
| T |
17450149 |
tgaacaa |
17450143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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