View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3257_high_1 (Length: 811)
Name: NF3257_high_1
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 201 - 796
Target Start/End: Complemental strand, 7927301 - 7926706
Alignment:
| Q |
201 |
ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927301 |
ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt |
7927202 |
T |
|
| Q |
301 |
tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927201 |
tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc |
7927102 |
T |
|
| Q |
401 |
ttagcctcaaaaaccaaaacctccacacccattttcccttctcaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927101 |
ttagcctcaaaaaccaaaacctccacacccattttcccttcacaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc |
7927002 |
T |
|
| Q |
501 |
gtttttctcactcacccattcctccaaattctaatcctcattgtcatagattcttctcttcactcacatcttctaaaaatctcaacttttcaatacccaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927001 |
gtttttctcactcacccattcctccaaattcgaatcctcatagtcatagattcttctcttcactcacatcttctaaaaatctcaacttttcaatacccaa |
7926902 |
T |
|
| Q |
601 |
taacactctcaacaacccctttacctcaaattcacaatcaactagtattgtttggaacccagctttggaaaacggaaatgagggtttttacggtggaaac |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7926901 |
taacactctcaacaacccctttacctcaaattcacaatcaactagtattgtttggaacccagctttggaaaacggaaatgaaggtttttacggtggaaac |
7926802 |
T |
|
| Q |
701 |
aaaaaccgtgttgttacggtggttttgttggggtggcttggagcaaaaaccagacaccttaaaagatatgctgaatggtacaattcacgtggtttt |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7926801 |
aaaaaccgtgttgttacggtggttttgttggggtggcttggagcaaaaaccagacaccttaaaagatatgctgaatggtacaattcacgtggtttt |
7926706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 30964673 - 30964797
Alignment:
| Q |
81 |
tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
30964673 |
tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta |
30964772 |
T |
|
| Q |
173 |
agtgtgttcacctatcaggactcat |
197 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
30964773 |
agtgtgttcacctatcaggactcat |
30964797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 35836303 - 35836349
Alignment:
| Q |
86 |
gtttatatgagttttgactaaactacccttcattaaaagataaaata |
132 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||| ||||| |
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|
| T |
35836303 |
gtttatatgaattatgacaaaactacccttcattaaaagatgaaata |
35836349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 26145069 - 26144947
Alignment:
| Q |
81 |
tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
26145069 |
tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta |
26144970 |
T |
|
| Q |
173 |
agtgtgttcacctatcaggactc |
195 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
26144969 |
agtgtgttcacccatcaggactc |
26144947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 29633680 - 29633737
Alignment:
| Q |
86 |
gtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactacc |
143 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29633680 |
gtttatatgggttttgacaaaactacccttcattaaaagatgaaataccaaaactacc |
29633737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 51946197 - 51946312
Alignment:
| Q |
82 |
caaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat---------gggtgtatcagagtgtgttgccagcta |
172 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||| ||| |||||||| || ||||||||| |||| |
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| T |
51946197 |
caaggtttatatgggttttgacaaaactacccttcattaaaagaagaaatactaaaactatcatgccacatgggggtgtataagggtgtgttgcatgcta |
51946296 |
T |
|
| Q |
173 |
agtgtgttcacctatc |
188 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
51946297 |
agtgtgttcacctatc |
51946312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 41076478 - 41076595
Alignment:
| Q |
88 |
ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat----------gggtgtatcagagtgtgttgccagctaagtgt |
177 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| | ||||||| |||||||||||||| ||||| | |
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| T |
41076478 |
ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccaaaactaccctgccacatggggggtgtacaagagtgtgttgccacctaagcat |
41076577 |
T |
|
| Q |
178 |
gttcacctatcaggactc |
195 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
41076578 |
gttcacctatcaggactc |
41076595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 42009169 - 42009285
Alignment:
| Q |
88 |
ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactac-------catggg--tgtatcagagtgtgttgccagctaagtgtg |
178 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| | ||||||| ||||||| |||||| |||| |||||||||||||| ||||| || |
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|
| T |
42009169 |
ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccgaaactaccctgccacatggggatgtacaagagtgtgttgccacctaagcatg |
42009268 |
T |
|
| Q |
179 |
ttcacctatcaggactc |
195 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
42009269 |
ttcacctatcaggactc |
42009285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 6102073 - 6102022
Alignment:
| Q |
82 |
caaggtttatatgagttttgactaaactacccttcattaaaagataaaatac |
133 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
6102073 |
caaggtttatatgggttttgacaaaactactcttcattaaaagatgaaatac |
6102022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 6101031 - 6100982
Alignment:
| Q |
146 |
gggtgtatcagagtgtgttgccagctaagtgtgttcacctatcaggactc |
195 |
Q |
| |
|
|||||||| || | |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
6101031 |
gggtgtataagggggtgttgccagctaaatgtgttcacctatcagcactc |
6100982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 31047199 - 31047240
Alignment:
| Q |
82 |
caaggtttatatgagttttgactaaactacccttcattaaaa |
123 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
31047199 |
caaggtttatatgggttttgacaaaactacccttcattaaaa |
31047240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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