View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_10 (Length: 320)
Name: NF3257_high_10
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 43208855 - 43208568
Alignment:
| Q |
16 |
acagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactgattag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43208855 |
acagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctaactgattag |
43208756 |
T |
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| Q |
116 |
aatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaagagaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208755 |
aatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaatttgagcaatgacactgtccatgaagataataaaaggtatattaagagaca |
43208656 |
T |
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| Q |
216 |
aatcctatcctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208655 |
aatcctatcctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaac |
43208568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 43188504 - 43188279
Alignment:
| Q |
16 |
acagaacaaaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactgattag |
115 |
Q |
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|||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||| |
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| T |
43188504 |
acagaacaaaacacacagaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattgatgaggggcaaatgctacacctagctgattag |
43188405 |
T |
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| Q |
116 |
aatttagaagtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaagagaca |
215 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
43188404 |
aatttagaagtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcatattaagagaca |
43188305 |
T |
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| Q |
216 |
aatcctatcctctacatgcatatgat |
241 |
Q |
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| T |
43188304 |
aatcctatcctctacatgcatatgat |
43188279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 43187888 - 43187826
Alignment:
| Q |
234 |
catatgatattttcatgtcctaatccacataaacagcttcaatacc-gagcatctccaatatc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43187888 |
catatgatattttcatgtcctaatccacataaacagcttcaataccttggcatctccaatatc |
43187826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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