View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_11 (Length: 304)
Name: NF3257_high_11
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36041535 - 36041726
Alignment:
| Q |
1 |
cccgtgataaactgatatgcatgtacgtacgtacgtacgtatacaaacattaaaacatagacaaaaatttgctgtaatcaaagaatccctatagtcatat |
100 |
Q |
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| T |
36041535 |
cccgtgataaactgatatatatgcatgtacgtacgtacgtatacaaacattaaaacatagacaaaaatttgctgtaatcaaagaatccctatagtcatat |
36041634 |
T |
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| Q |
101 |
agttatac------attaatattagtggtctttcaatcaagatcggactgtcgtgagttaatctaggtaattttagaattataaattaaaattgattgaa |
194 |
Q |
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| T |
36041635 |
agttatacattaatattaatattagtggtctttcaatcaagatcggactgtcgtgagttaa----------tttagaattataaattaaaattgattgaa |
36041724 |
T |
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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 36041777 - 36041874
Alignment:
| Q |
192 |
gaatccaacttcttaaaacacacatactatattggacttgactctctcacagttaagtcacgtaaatactatttgtgaattgtgattgagacaattgat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36041777 |
gaatccaacttcttaaaacacacatactatattggatttgactctctcacagtt-agtcacgtaaatactatttgtgaattgtgattgagacaattgat |
36041874 |
T |
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