View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3257_high_17 (Length: 244)
Name: NF3257_high_17
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33866859 - 33866632
Alignment:
| Q |
1 |
tccaataacttctaattataaaaatgttacctctcattgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866859 |
tccaataacttctaattataaaaatgttacctctcattgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaa |
33866760 |
T |
|
| Q |
101 |
gtgaactcttaagtgaaacaaaaatcaaacttttatgattgtgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacg |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866759 |
gtgaactcttaagtgaaatacaaatcaaacttttatgattctgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacg |
33866660 |
T |
|
| Q |
201 |
tctgctcgctccggctagatggaaaaca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33866659 |
tctgctcgctccggctagatggaaaaca |
33866632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 44574089 - 44574005
Alignment:
| Q |
144 |
catcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaaca |
228 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
44574089 |
catcatcatcatgtatgtcaagatggtttaatttgagagcagcggctgtttgcgtcgtctgctcactccggctagatggaaaaca |
44574005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5771193 - 5771420
Alignment:
| Q |
1 |
tccaataacttctaattataaaaatgttacctctcattgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5771193 |
tccaataacttctaattataaaaacgttacctctcattgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaa |
5771292 |
T |
|
| Q |
101 |
gtgaactcttaagtgaaacaaaaatcaaacttttatgattgtgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacg |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5771293 |
gtgaactcttaagtgaaatacaaatcaaacttttatgattctgcataatcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacg |
5771392 |
T |
|
| Q |
201 |
tctgctcgctccggctagatggaaaaca |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
5771393 |
tctgctcgctccggctaggtggaaaaca |
5771420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 5894555 - 5894614
Alignment:
| Q |
36 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttga |
95 |
Q |
| |
|
||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
5894555 |
attgaaggatttacctcctttatgttggttagcgattggtaatgcacattcttttcttga |
5894614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University