View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3257_high_18 (Length: 238)

Name: NF3257_high_18
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3257_high_18
NF3257_high_18
[»] chr8 (22 HSPs)
chr8 (1-221)||(11745577-11745808)
chr8 (87-145)||(30277257-30277315)
chr8 (84-145)||(30389096-30389157)
chr8 (84-141)||(31862490-31862547)
chr8 (93-141)||(20672756-20672804)
chr8 (99-138)||(25872438-25872477)
chr8 (87-145)||(8060669-8060727)
chr8 (85-139)||(27028829-27028883)
chr8 (84-141)||(8062326-8062383)
chr8 (85-145)||(4558796-4558856)
chr8 (81-141)||(11183539-11183599)
chr8 (87-134)||(10075574-10075621)
chr8 (87-141)||(1930035-1930089)
chr8 (87-145)||(11569469-11569527)
chr8 (104-145)||(23996639-23996680)
chr8 (84-145)||(28769351-28769412)
chr8 (84-141)||(31705082-31705139)
chr8 (84-141)||(43504748-43504805)
chr8 (84-145)||(12132830-12132893)
chr8 (72-144)||(31804467-31804539)
chr8 (85-141)||(37353265-37353321)
chr8 (107-147)||(41606913-41606953)
[»] chr1 (19 HSPs)
chr1 (85-144)||(25479579-25479638)
chr1 (84-144)||(4700079-4700139)
chr1 (87-145)||(27140478-27140536)
chr1 (69-135)||(44422681-44422747)
chr1 (84-145)||(3224420-3224481)
chr1 (88-145)||(10199420-10199477)
chr1 (84-145)||(23902079-23902140)
chr1 (84-145)||(34290233-34290294)
chr1 (80-145)||(35351032-35351097)
chr1 (93-145)||(12641718-12641770)
chr1 (86-145)||(7137010-7137069)
chr1 (86-141)||(7472310-7472365)
chr1 (87-145)||(15558217-15558275)
chr1 (96-145)||(6279408-6279457)
chr1 (84-145)||(6659511-6659572)
chr1 (89-145)||(3223670-3223725)
chr1 (87-139)||(13975647-13975699)
chr1 (105-145)||(15361058-15361098)
chr1 (84-145)||(28689464-28689527)
[»] chr6 (10 HSPs)
chr6 (84-145)||(281860-281921)
chr6 (84-144)||(31671087-31671147)
chr6 (84-124)||(3525145-3525185)
chr6 (70-145)||(7446343-7446418)
chr6 (87-141)||(6647387-6647441)
chr6 (87-145)||(32386118-32386176)
chr6 (84-145)||(4006711-4006772)
chr6 (84-141)||(9093572-9093629)
chr6 (85-141)||(835265-835321)
chr6 (71-139)||(1275133-1275201)
[»] chr2 (12 HSPs)
chr2 (69-141)||(13736309-13736381)
chr2 (86-132)||(10884546-10884592)
chr2 (86-139)||(9174814-9174867)
chr2 (94-145)||(35379028-35379079)
chr2 (84-142)||(36236457-36236513)
chr2 (84-145)||(7103494-7103556)
chr2 (84-138)||(9556236-9556290)
chr2 (87-145)||(11488277-11488335)
chr2 (88-145)||(3078652-3078709)
chr2 (84-141)||(22681201-22681258)
chr2 (84-145)||(42621387-42621448)
chr2 (69-145)||(40158700-40158776)
[»] chr5 (21 HSPs)
chr5 (87-145)||(3237093-3237151)
chr5 (87-141)||(3947572-3947626)
chr5 (85-139)||(6593297-6593351)
chr5 (87-145)||(41957463-41957521)
chr5 (84-145)||(16889732-16889793)
chr5 (87-144)||(18543210-18543266)
chr5 (81-112)||(3951609-3951640)
chr5 (86-145)||(38104869-38104927)
chr5 (87-145)||(7907881-7907939)
chr5 (87-141)||(11615501-11615555)
chr5 (87-145)||(11707055-11707113)
chr5 (88-141)||(4014440-4014493)
chr5 (84-145)||(10272443-10272504)
chr5 (84-145)||(12425568-12425629)
chr5 (88-141)||(17258899-17258952)
chr5 (84-145)||(32194091-32194152)
chr5 (90-139)||(36638750-36638799)
chr5 (93-138)||(36774726-36774771)
chr5 (72-145)||(39594792-39594865)
chr5 (61-145)||(12975321-12975404)
chr5 (69-141)||(14295488-14295560)
[»] chr3 (9 HSPs)
chr3 (87-145)||(1217812-1217870)
chr3 (85-142)||(20502083-20502140)
chr3 (86-143)||(34924552-34924609)
chr3 (85-145)||(38462279-38462339)
chr3 (84-141)||(24887299-24887356)
chr3 (87-139)||(4013497-4013549)
chr3 (101-141)||(6483815-6483855)
chr3 (101-145)||(24785275-24785319)
chr3 (101-145)||(33883762-33883806)
[»] chr7 (17 HSPs)
chr7 (88-141)||(7521273-7521326)
chr7 (84-145)||(20553100-20553161)
chr7 (86-145)||(514766-514825)
chr7 (84-139)||(21453291-21453346)
chr7 (84-123)||(28340878-28340917)
chr7 (86-136)||(23721505-23721555)
chr7 (87-145)||(24363613-24363671)
chr7 (84-142)||(40530424-40530482)
chr7 (87-145)||(44821959-44822017)
chr7 (87-136)||(6601367-6601416)
chr7 (84-141)||(38010711-38010768)
chr7 (85-142)||(46281155-46281212)
chr7 (81-145)||(4966150-4966214)
chr7 (85-141)||(5369708-5369763)
chr7 (93-145)||(7244686-7244738)
chr7 (89-145)||(9423606-9423662)
chr7 (93-145)||(27378840-27378892)
[»] chr4 (15 HSPs)
chr4 (84-145)||(7694022-7694083)
chr4 (84-141)||(29601024-29601081)
chr4 (85-141)||(6978978-6979034)
chr4 (86-145)||(46859929-46859988)
chr4 (63-141)||(30207587-30207665)
chr4 (84-114)||(32066453-32066483)
chr4 (94-140)||(39063664-39063710)
chr4 (87-145)||(53673670-53673728)
chr4 (84-145)||(8468945-8469006)
chr4 (84-145)||(16494817-16494878)
chr4 (88-145)||(17975381-17975438)
chr4 (61-142)||(24929467-24929548)
chr4 (87-140)||(47800623-47800676)
chr4 (95-139)||(32421277-32421321)
chr4 (87-139)||(52259631-52259683)
[»] scaffold0003 (1 HSPs)
scaffold0003 (94-141)||(306333-306380)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11745808 - 11745577
Alignment:
Q  1 cataagctcttatcgtgtaagtgcttatgtattatgttattttcatagaannnnnnnnattaaaatctaactgttttcccattagctataagctgttttt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  11745808 cataagctcttatcatgtaagtgcttatgtattatgttattttcatagaattttttttattaaaatctaactgttttcccattagctataagctgttttt 11745709  T
Q  101 ataagctatcctagtgagcttatgaaactaagctgaaaacaac-----------ttttaataaattttatttaacagtttcacaagtgcttatatcacta 189  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||    
T  11745708 ataagctatcctagtgagcttatgaaactaagctgaaaacaacttataaacctgttttaataaattttatttaacagtttcacaagtgcttatatcacta 11745609  T
Q  190 gaacaagctcatccaaacatagccttatattt 221  Q
    ||||||||||||||||||||||||||||||||    
T  11745608 gaacaagctcatccaaacatagccttatattt 11745577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 30277315 - 30277257
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||||||| ||| ||||| || |||||||||||||||||    
T  30277315 tataagctgttttcataagctatcctagagagtttatggaaataagctgaaaacaactt 30277257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 30389096 - 30389157
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| |||||||| ||||||| |||||| || ||||||||| |||||||||||||||||    
T  30389096 agctatacgctgttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 31862490 - 31862547
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||||||    
T  31862490 agctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaaca 31862547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 20672756 - 20672804
Alignment:
Q  93 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||    
T  20672756 ctgtttttataagctatcctggagagcttatgaaaataagctgaaaaca 20672804  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 25872477 - 25872438
Alignment:
Q  99 ttataagctatcctagtgagcttatgaaactaagctgaaa 138  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  25872477 ttataagctatcctagtgagcttatgaaaataagctgaaa 25872438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 8060669 - 8060727
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||| ||||||| ||||||||| || ||||||||||| |||||    
T  8060669 tataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaataactt 8060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 27028829 - 27028883
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||||||||| |||||||||| | | |||||||||||| |||||||||||    
T  27028829 gctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 8062326 - 8062383
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||| |||||||||| ||| ||| ||||| || |||||||||||||    
T  8062326 agctataagctgttttcataagctatcttagagagattatggaaataagctgaaaaca 8062383  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 4558796 - 4558856
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||||  |||||||||||||| ||||||||| || ||| || ||||||||||    
T  4558796 gctataagctgtttccataagctatcctagagagcttatggaaataaactaaaaacaactt 4558856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 11183539 - 11183599
Alignment:
Q  81 attagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||||||||||| | |||||| ||| | ||||||||| || |||||||||||||    
T  11183539 attagctataagctgttttcacaagctaccctggagagcttatggaaataagctgaaaaca 11183599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 10075621 - 10075574
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagct 134  Q
    |||||||| |||| |||||||||||||| |||||||||||| ||||||    
T  10075621 tataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 1930035 - 1930089
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||||| |||||||||| | |||| ||| ||||| |||||||||||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaaataagctgaaaaca 1930089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 11569527 - 11569469
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||| | | ||| || ||||| |||||||||||||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaactt 11569469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 23996680 - 23996639
Alignment:
Q  104 agctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||| |||||||||||| |||||| ||||||||||    
T  23996680 agctatcctagagagcttatgaaaataagctaaaaacaactt 23996639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 28769412 - 28769351
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| |||||||||  | | ||| ||||| || |||||||||||||||||    
T  28769412 agctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaactt 28769351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 31705082 - 31705139
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||| ||||||| |||| | ||| ||||| || |||||||||||||    
T  31705082 agctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaaca 31705139  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 43504748 - 43504805
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||| ||||||||||||||||| | | || |||||| || |||||||||||||    
T  43504748 agctataagatgtttttataagctatcttggagaacttatggaaataagctgaaaaca 43504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 12132830 - 12132893
Alignment:
Q  84 agctataagctgtttttataagctatcctagt--gagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| ||||| |||||| ||   ||||||||||| |||| ||||||||||||    
T  12132830 agctataagctgttttcataagttatcctggttcaagcttatgaaaataagttgaaaacaactt 12132893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 31804539 - 31804467
Alignment:
Q  72 tgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaact 144  Q
    |||||||| || || ||||||| ||||| || ||||||| | | ||||||||||||  |||||||||||||||    
T  31804539 tgttttcctataagttataagcagttttcatgagctatctttgagagcttatgaaaggaagctgaaaacaact 31804467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 37353321 - 37353265
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||  ||||||||| | | |||||||||||| ||| |||||||||    
T  37353321 gctataagctgttttcttaagctatctttgagagcttatgaaaataatctgaaaaca 37353265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 41606953 - 41606913
Alignment:
Q  107 tatcctagtgagcttatgaaactaagctgaaaacaactttt 147  Q
    |||||||| ||||||||| || |||||||||||||||||||    
T  41606953 tatcctagagagcttatggaaataagctgaaaacaactttt 41606913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 25479579 - 25479638
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaact 144  Q
    |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  25479579 gctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaact 25479638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 4700139 - 4700079
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaact 144  Q
    |||||||| |||||||||||| ||||||| | |||||||||||| ||||||||||||||||    
T  4700139 agctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 27140478 - 27140536
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||||||||||| | | ||||||||| || |||||||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaactt 27140536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 44422681 - 44422747
Alignment:
Q  69 aactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctg 135  Q
    ||||||||||  || ||||||||||| ||||||||||||||||| | |||||||||||| |||||||    
T  44422681 aactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctg 44422747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 3224420 - 3224481
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| | |||||||||||||||| |||| || ||||||||| |||||||| ||||||||    
T  3224420 agctatagggtgtttttataagctattctagagaacttatgaaaataagctgagaacaactt 3224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 10199477 - 10199420
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| |||| |||||||||  ||| |||||||||||| |||||||||||||||||    
T  10199477 ataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaactt 10199420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 23902140 - 23902079
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| | |||||||| ||| ||||||||| || |||||||||||||||||    
T  23902140 agctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaactt 23902079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 34290233 - 34290294
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| |||||||||| |   || ||||||||| |||||||||||||||||    
T  34290233 agctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaactt 34290294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 35351032 - 35351097
Alignment:
Q  80 cattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| ||| || |||| ||||||||| |||||||  ||| |||||||||||||||||    
T  35351032 cattagctataagttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaactt 35351097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 12641718 - 12641770
Alignment:
Q  93 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||| ||||||||| | |||||||||| |||| ||||||||||||    
T  12641718 ctgtttttataatctatcctagagtgcttatgaaaataagatgaaaacaactt 12641770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 7137069 - 7137010
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||| |||||||||| | | || ||||||||| ||||||||||| |||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataactt 7137010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 7472310 - 7472365
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||  |||||||||| | | |||||||||||| |||||||||||||    
T  7472310 ctataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaaca 7472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 15558217 - 15558275
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| ||||| |||||||| || |||||  || |||||||||||||||||    
T  15558217 tataagctgttttcataagatatcctagagaacttatagaaataagctgaaaacaactt 15558275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 6279408 - 6279457
Alignment:
Q  96 tttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||| |||||||||||||| ||||||||| || || ||||||||||||||    
T  6279408 ttttcataagctatcctagagagcttatggaaatacgctgaaaacaactt 6279457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 6659511 - 6659572
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| |||||||| || || ||||||||  || |||||||||||||||||    
T  6659511 agctataagatgttttcataagctaaccaagagagcttatcgaaataagctgaaaacaactt 6659572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 3223670 - 3223725
Alignment:
Q  89 taagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||| ||||||  |||| |||||||| |||||||||||| |||||||||||||||||    
T  3223670 taagttgttttcgtaagttatcctagcgagcttatgaaa-taagctgaaaacaactt 3223725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 13975647 - 13975699
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||||||| || |||| |||||| |||||| ||||| |||||||||||    
T  13975647 tataagctgttttcattagctgtcctagagagcttgtgaaaataagctgaaaa 13975699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 15361058 - 15361098
Alignment:
Q  105 gctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||| | |||||||||||| |||||||||||||||||    
T  15361058 gctatcctggagagcttatgaaaataagctgaaaacaactt 15361098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 28689527 - 28689464
Alignment:
Q  84 agctataagctgtttt--tataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| ||||||  ||||||||||| | |  ||||||||||| |||||||||||||||||    
T  28689527 agctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaactt 28689464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 281921 - 281860
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| || |||||||||||||| ||||| ||| || |||||||||||||||||    
T  281921 agctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaactt 281860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 31671147 - 31671087
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaact 144  Q
    ||||||||||||||||  ||| |||||||||  ||||||||||| ||||||||||||||||    
T  31671147 agctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaact 31671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 3525145 - 3525185
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatg 124  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  3525145 agctataagctgtttttatatgctatcctagagagcttatg 3525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 7446418 - 7446343
Alignment:
Q  70 actgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||  || ||| |||||||||||| ||||||||||  || | |||||||||| ||| |||||||||||||    
T  7446418 actgttttcatataagccataagctgttttcataagctatctcagggggcttatgaaaataacctgaaaacaactt 7446343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 6647387 - 6647441
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||| ||||||| |||||||||| ||| |||||||||||| |||| ||||||||    
T  6647387 tataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaaca 6647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 32386176 - 32386118
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| || || |||||| |  ||||||||||| |||||||||||||||||    
T  32386176 tataagctgttttcattagttatcctggaaagcttatgaaagtaagctgaaaacaactt 32386118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 4006711 - 4006772
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| |||||||||||  | ||| |||||||| ||||||||||| |||||    
T  4006711 agctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaataactt 4006772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 9093629 - 9093572
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||| ||||||| || ||| || |||| |||| |||||||||||||    
T  9093629 agctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaaca 9093572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 835321 - 835265
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||| ||||| |||||||||| | | || ||||||||| |||||||||||||    
T  835321 gctataagcagttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 1275133 - 1275201
Alignment:
Q  71 ctgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||  || |||||||||||||||| ||| | |||||| | ||||||||| || |||||||||||    
T  1275133 ctgttttcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaaaa 1275201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 13736381 - 13736309
Alignment:
Q  69 aactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||| ||||| ||| |||||||||||||||| ||||||||| |||| |||||||||||| |||  ||||||||    
T  13736381 aactattttcacatcagctataagctgttttcataagctatactagagagcttatgaaaataacttgaaaaca 13736309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 10884592 - 10884546
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaag 132  Q
    |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 9174814 - 9174867
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    |||||||||||||| |||||||||| ||  |||||||||||| |||||||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaa 9174867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 35379079 - 35379028
Alignment:
Q  94 tgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||| |||||||||| | | |||||||||||| |||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaactt 35379028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 36236513 - 36236457
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaa 142  Q
    ||||||||| |||||||||| |||||||| |  ||||||||||| ||||||||||||||    
T  36236513 agctataagttgtttttatatgctatcctgg--agcttatgaaaataagctgaaaacaa 36236457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 7103556 - 7103494
Alignment:
Q  84 agctataagctgttttt-ataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||||||| |||||||||| ||| ||| || ||||| |||||| ||||||||||    
T  7103556 agctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaactt 7103494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 9556236 - 9556290
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaa 138  Q
    |||||||| ||||||| ||||||||||||||  ||||||||||| |||| |||||    
T  9556236 agctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaa 9556290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 11488277 - 11488335
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| ||| |||||||||||| | ||| ||||| || |||||||||||||||||    
T  11488277 tataagctgctttcataagctatcctggagagattatgcaaataagctgaaaacaactt 11488335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 3078709 - 3078652
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||||||||||||| | | |||||| || || |||||| ||||||||||    
T  3078709 ataagctgtttttataagctatcttggagagcttctggaaataagctaaaaacaactt 3078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 22681258 - 22681201
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||| |||| ||||||||| || |||||| || |||||| ||||||    
T  22681258 agctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaaca 22681201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 42621448 - 42621387
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| ||||| ||| || | || ||| ||||| |||||||||||||||||    
T  42621448 agctataagctgttttcataagttattctggagaacttgtgaaaataagctgaaaacaactt 42621387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 40158700 - 40158776
Alignment:
Q  69 aactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||  || ||| ||||| |||||| ||||| ||| || | ||||||||| || |||||||||||||||||    
T  40158700 aactgttttcgtataagcaataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaactt 40158776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 3237093 - 3237151
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||||||  |||||||||||| || |||||| |||||||    
T  3237093 tataagctgttttcataagctatcctaaagagcttatgaaaatatgctgaacacaactt 3237151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 3947626 - 3947572
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||||||||||||||| |||| ||| |||||||| |||||| ||||||    
T  3947626 tataagctgtttttataagctattctagcgagattatgaaaataagctaaaaaca 3947572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 6593297 - 6593351
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||||||||| |||||||| | ||| |||||||||||| |||||||||||    
T  6593297 gctataagctgttttgataagctaccttagagagcttatgaaaataagctgaaaa 6593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 41957521 - 41957463
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||||| | || ||||||||| |||| ||||||||||||    
T  41957521 tataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaactt 41957463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 16889732 - 16889793
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| ||||||||| |||| ||| ||||| || ||| |||||||||||||    
T  16889732 agctataagctgttttcataagctatgctagagagtttatggaaataatctgaaaacaactt 16889793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 18543266 - 18543210
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaact 144  Q
    |||||| |||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaa-taagctgaaaacaact 18543210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 3951609 - 3951640
Alignment:
Q  81 attagctataagctgtttttataagctatcct 112  Q
    ||||||||||||||||||||||||||||||||    
T  3951609 attagctataagctgtttttataagctatcct 3951640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 38104927 - 38104869
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||  |||||||||| ||| ||||||||| || |||||||||||||||||    
T  38104927 ctataagctgtttc-ataagctatcttagagagcttatggaaataagctgaaaacaactt 38104869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 7907881 - 7907939
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||| |||||| ||||||| || | | |||||||||||| |||||||||||||||||    
T  7907881 tataagttgttttgataagctgtcttggagagcttatgaaattaagctgaaaacaactt 7907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 11615501 - 11615555
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||||| ||||| ||||||  |||||||||| || |||||||||||||    
T  11615501 tataagctgttttcataagatatccttatgagcttatggaaataagctgaaaaca 11615555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 11707055 - 11707113
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||| |   |||||| ||||| |||||||||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaactt 11707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 4014493 - 4014440
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||| |||||||||| | | || ||||||||| |||||||||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaaca 4014440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 10272504 - 10272443
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| |||||| ||| | | ||| |||||||| |||||||||||||||||    
T  10272504 agctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaactt 10272443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 12425568 - 12425629
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| | |||||||| | | || ||||||||| |||| ||||||||||||    
T  12425568 agctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaactt 12425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 17258952 - 17258899
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||| |||| |||||||   |||||||||||| |||||||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaaca 17258899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 32194152 - 32194091
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| ||||||| ||||||||| | | ||||||||  || |||||||||||||||||    
T  32194152 agctataagatgtttttttaagctatctttgagagcttatataaataagctgaaaacaactt 32194091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 36638750 - 36638799
Alignment:
Q  90 aagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    |||||||||| ||||| |||||||| ||||||||| || |||||||||||    
T  36638750 aagctgttttcataagttatcctagagagcttatggaaataagctgaaaa 36638799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 36774771 - 36774726
Alignment:
Q  93 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaa 138  Q
    |||||||||||||||||||| | ||||||||| || ||||||||||    
T  36774771 ctgtttttataagctatcctggagagcttatggaaataagctgaaa 36774726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 39594792 - 39594865
Alignment:
Q  72 tgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| ||| || | ||||||||||| ||||| |||| |  ||| ||||||||| |||||||||||||||||    
T  39594792 tgttttcgcataagttgtaagctgttttcataagatatcttgttgaacttatgaaaataagctgaaaacaactt 39594865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 12975321 - 12975404
Alignment:
Q  61 taaaatctaactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| || |||||||  || ||||||||||||| || |||||||||| | | ||||||||| || |||| ||||||||||||    
T  12975321 taaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatggaa-taagttgaaaacaactt 12975404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 14295488 - 14295560
Alignment:
Q  69 aactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||  || ||||||||||||||||  ||||||||||| | |||||| |  || |||||||||||||    
T  14295488 aactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaaca 14295560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 1217870 - 1217812
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| |||||||||||| | || ||||||||| |||| ||||||||||||    
T  1217870 tataagctgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaactt 1217812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 20502140 - 20502083
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaa 142  Q
    ||||||||||||||| ||||||||||||   |||||||||| | ||||||||||||||    
T  20502140 gctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaacaa 20502083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 34924609 - 34924552
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaac 143  Q
    |||| |||| |||| |||||||||| ||| |||||||||||| |||||||||||||||    
T  34924609 ctatgagctattttcataagctatcttagagagcttatgaaaataagctgaaaacaac 34924552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 38462279 - 38462339
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| ||||||| ||||||||||| ||  |||||||| || |||||||||||||||||    
T  38462279 gctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaactt 38462339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 24887356 - 24887299
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||| |||||||||| |||||||||||| | |||||||||  | |||||||||||||    
T  24887356 agctaaaagctgttttcataagctatcctggagagcttatgggaataagctgaaaaca 24887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 4013549 - 4013497
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||||||| || |||| |||||| |||||| ||||| |||||||||||    
T  4013549 tataagctgttttcattagctgtcctagagagcttgtgaaaataagctgaaaa 4013497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 6483815 - 6483855
Alignment:
Q  101 ataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||| |||||||| ||| |||||||||||||    
T  6483815 ataagctatcctagagagcttattaaaataagctgaaaaca 6483855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 24785275 - 24785319
Alignment:
Q  101 ataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||| |||||||||||| ||| || ||||||||||    
T  24785275 ataagctatcctagggagcttatgaaaataaactaaaaacaactt 24785319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 33883806 - 33883762
Alignment:
Q  101 ataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||| ||| || ||||||||| |||||||||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaacaactt 33883762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 7521273 - 7521326
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||| |||| ||||||||| |||||| ||||| |||||||||||||    
T  7521273 ataagctgttttaataaactatcctagagagcttctgaaaataagctgaaaaca 7521326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 20553100 - 20553161
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| | ||| |||||||||||||||||| || ||| |||||||||||||    
T  20553100 agctataagttgttttcacaagttatcctagtgagcttatggaaataatctgaaaacaactt 20553161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 514766 - 514825
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||| |||||||||||| | |||||| | ||| ||||||||||| |||||    
T  514766 ctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataactt 514825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 21453291 - 21453346
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    |||||||| ||||||| |||||||||||||| ||||| |||||  |||||||||||    
T  21453291 agctataaactgttttcataagctatcctagagagctaatgaagataagctgaaaa 21453346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 28340917 - 28340878
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttat 123  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  28340917 agctataagctgttttcataagctatcctagagagcttat 28340878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 23721505 - 23721555
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctga 136  Q
    ||||||| ||||||||||||||||||| ||| ||||||| || ||||||||    
T  23721505 ctataagttgtttttataagctatccttgtgcgcttatggaaataagctga 23721555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 24363671 - 24363613
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||| |||||| |||||||||||| | ||| ||||| || |||||||||||||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaactt 24363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 40530482 - 40530424
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaa 142  Q
    ||||||||| |||||| |||||||||||||  || ||||||||| |||| |||||||||    
T  40530482 agctataagttgttttaataagctatcctaaagaacttatgaaaataagttgaaaacaa 40530424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 44821959 - 44822017
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||| ||||||||| || | || ||||||||| |||| ||||||||||||    
T  44821959 tataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaactt 44822017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 6601367 - 6601416
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctga 136  Q
    ||||||||||||||||||||||| || | | |||||||||| ||||||||    
T  6601367 tataagctgtttttataagctattctggagtgcttatgaaaataagctga 6601416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 38010711 - 38010768
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||||||||||| |||| ||||||||| || |||||| || |||||| ||||||    
T  38010711 agctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaaca 38010768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 46281212 - 46281155
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaa 142  Q
    ||||||||||||||||||||||||| || | | ||||||  || ||||||||||||||    
T  46281212 gctataagctgtttttataagctattctggagggcttatataaataagctgaaaacaa 46281155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 4966150 - 4966214
Alignment:
Q  81 attagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||| ||||||||||||| |||||| |||||   ||||||||| || ||| |||||||||||||    
T  4966150 attaggtataagctgttttcataagccatcctgaagagcttatggaaataaactgaaaacaactt 4966214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 5369763 - 5369708
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||||||||||||| ||||||||||| || | ||||||||||  ||||||||||||    
T  5369763 gctataagctgttttcataagctatcccagag-gcttatgaaataaagctgaaaaca 5369708  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 7244686 - 7244738
Alignment:
Q  93 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| |||||||||  | | |||||||||||| |||||||||||||||||    
T  7244686 ctgttttcataagctatattggagagcttatgaaaataagctgaaaacaactt 7244738  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 9423662 - 9423606
Alignment:
Q  89 taagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||| |||||||||||| | |||||| |  || |||||||||||||||||    
T  9423662 taagctgttttaataagctatcctggagagcttcttgaaataagctgaaaacaactt 9423606  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 27378892 - 27378840
Alignment:
Q  93 ctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||| |||| ||||||| | |||||||||||| ||| |||||||||||||    
T  27378892 ctgttttcataaactatcctggagagcttatgaaaataaactgaaaacaactt 27378840  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 7694083 - 7694022
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||||||||||||| ||||| |||||| | ||| ||||| || |||||||||||||||||    
T  7694083 agctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaactt 7694022  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 29601081 - 29601024
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||| ||||||| ||| |||||||||| || ||||||||| |||||||||||||    
T  29601081 agctataatctgttttcatatgctatcctagagaacttatgaaaataagctgaaaaca 29601024  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 6979034 - 6978978
Alignment:
Q  85 gctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||||| ||||||||||||| ||||||  ||| |||||||| |||||||||||||    
T  6979034 gctataagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaaca 6978978  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 46859929 - 46859988
Alignment:
Q  86 ctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||||||||| ||||| | | ||| || ||||| |||||||||||||||||    
T  46859929 ctataagctgtttttataacctatcatggggagtttttgaaagtaagctgaaaacaactt 46859988  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 30207665 - 30207587
Alignment:
Q  63 aaatctaactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    ||||| ||||||||||  || ||||||||| |||||| |||||||| | ||| ||| ||||| || |||||||||||||    
T  30207665 aaatcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaaca 30207587  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 32066483 - 32066453
Alignment:
Q  84 agctataagctgtttttataagctatcctag 114  Q
    |||||||||||||||||||||||||||||||    
T  32066483 agctataagctgtttttataagctatcctag 32066453  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 39063710 - 39063664
Alignment:
Q  94 tgtttttataagctatcctagtgagcttatgaaactaagctgaaaac 140  Q
    ||||||||||||||||||| | |||||||||||| ||| ||||||||    
T  39063710 tgtttttataagctatcctggagagcttatgaaaataaactgaaaac 39063664  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 53673728 - 53673670
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||| ||||||| |||||||||| | | ||||||||| || |||||||||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaactt 53673670  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 8468945 - 8469006
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    |||||| || |||||| ||||| ||| |||| |||||||||||| ||| |||||||||||||    
T  8468945 agctattagttgttttcataagttattctagagagcttatgaaaataatctgaaaacaactt 8469006  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 16494878 - 16494817
Alignment:
Q  84 agctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||| |||||| |||||||||| | | |||||| | |||||||| ||||||||||||    
T  16494878 agctataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaacaactt 16494817  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 17975438 - 17975381
Alignment:
Q  88 ataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaactt 145  Q
    ||||||||||||||||||||||| | | |||||| || || |||||| ||||||||||    
T  17975438 ataagctgtttttataagctatcttggagagcttctggaaataagctaaaaacaactt 17975381  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 24929467 - 24929548
Alignment:
Q  61 taaaatctaactgttttcccattagctataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaacaa 142  Q
    |||| |||||||||||||  |  ||||||||| |||||| |||| || | |||| ||||||||| || ||||||||||||||    
T  24929467 taaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatggaaataagctgaaaacaa 24929548  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 47800623 - 47800676
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaac 140  Q
    ||||||||||||| |||||||||| |   |||||||||||| ||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaac 47800676  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 32421321 - 32421277
Alignment:
Q  95 gtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||    
T  32421321 gtttttataagctatcttagagaggttatgaaaataagctgaaaa 32421277  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 52259631 - 52259683
Alignment:
Q  87 tataagctgtttttataagctatcctagtgagcttatgaaactaagctgaaaa 139  Q
    ||||||||||||||||||||||||   | |||||||||||| |||| ||||||    
T  52259631 tataagctgtttttataagctatctgggagagcttatgaaaataagttgaaaa 52259683  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 306333 - 306380
Alignment:
Q  94 tgtttttataagctatcctagtgagcttatgaaactaagctgaaaaca 141  Q
    |||||| |||||||||||||| ||||||||| || |||||||||||||    
T  306333 tgttttcataagctatcctagagagcttatgtaagtaagctgaaaaca 306380  T

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