View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3257_high_22 (Length: 211)
Name: NF3257_high_22
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 37183593 - 37183418
Alignment:
| Q |
14 |
cagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183593 |
cagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcactt |
37183494 |
T |
|
| Q |
114 |
gacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaagacg |
189 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37183493 |
gacgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacaggaagctcattgaagacg |
37183418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 37194725 - 37194550
Alignment:
| Q |
14 |
cagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194725 |
cagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcactt |
37194626 |
T |
|
| Q |
114 |
gacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaagacg |
189 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37194625 |
gacgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacaggaagctcattgaagacg |
37194550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 37202612 - 37202491
Alignment:
| Q |
66 |
atgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttgacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagaca |
165 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||| |||||| || ||| |||||| | ||| | ||||| | || |||| |||||||||||||| | |
|
|
| T |
37202612 |
atgaaagtggaggtggattggcttcacatgaggctaattgaggtacgtgaggcaagggatattcttaagaaatctgcagtgctgaaagagaaaacagaga |
37202513 |
T |
|
| Q |
166 |
ataacaggaagctcattgaaga |
187 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
37202512 |
gtaataggaagctcattgaaga |
37202491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 5367153 - 5367220
Alignment:
| Q |
126 |
attatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaagacgctga |
193 |
Q |
| |
|
|||||| | ||||||| ||| ||| ||||||||| |||||||||||| |||||| ||||||| ||||| |
|
|
| T |
5367153 |
attatggataagtttgatattctagaagagaaaagagacaataacagcaagctctttgaagatgctga |
5367220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University