View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_23 (Length: 202)
Name: NF3257_high_23
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 41826710 - 41826865
Alignment:
| Q |
31 |
gaatcatacgtaataatgagagtttacactatcaatcaatcataaccgttagatcattgaaaacgttcaactttttatcataatgttttaaaatcaaaca |
130 |
Q |
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| T |
41826710 |
gaatcatacgtaataatgagagtttacactatcaatcaatcataatcgttagatcattgaaaacattcaactttttatcataatgttttaaaatcaaaca |
41826809 |
T |
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| Q |
131 |
tgagattggttgtgacgtgctaacagtccaaacttttttacacttacagtaaatta |
186 |
Q |
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| T |
41826810 |
tgtgattggttgtgacgtgctaacagtccaaactcttttacacttacagtaaatta |
41826865 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 4076104 - 4076065
Alignment:
| Q |
53 |
tttacactatcaatcaatcataaccgttagatcattgaaa |
92 |
Q |
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| T |
4076104 |
tttacactatcaatcaatcataatcgttagatcattgaaa |
4076065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 33657402 - 33657439
Alignment:
| Q |
56 |
acactatcaatcaatcataaccgttagatcattgaaaa |
93 |
Q |
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| T |
33657402 |
acactatcaatcaatcataaccgtcaaatcattgaaaa |
33657439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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