View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_3 (Length: 580)
Name: NF3257_high_3
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Complemental strand, 46290713 - 46290228
Alignment:
| Q |
9 |
agcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctc |
108 |
Q |
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| T |
46290713 |
agcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctc |
46290614 |
T |
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| Q |
109 |
gttcactttagctttctgaattctagcaataatacagattttctttcactcttttgtccnnnnnnnctgcctttatgttttatcacaaactactaggatc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||| |
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| T |
46290613 |
gttcactttagctttctgaattctagcaataatacagattttctttcactc--ttgtcctttttttcggcctttatgttttatcacaaactaccaggatc |
46290516 |
T |
|
| Q |
209 |
ctaacatagttcaggccaaattacttcgggattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatctattcttc |
308 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46290515 |
ctaacatagttcaggccaaattacttcggaattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatcta---ttc |
46290419 |
T |
|
| Q |
309 |
ttcnnnnnnntccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatgaaaaatttactaaactgaat |
408 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290418 |
ttcaaaaaaatccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatgaaaaatttactaaactgaat |
46290319 |
T |
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| Q |
409 |
cattaagaaaacatnnnnnnnntatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggatcctgtaacac |
499 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290318 |
cattaagaaaacataaaaaaaatatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggatcctgtaacac |
46290228 |
T |
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