View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_6 (Length: 408)
Name: NF3257_high_6
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 14794645 - 14794255
Alignment:
| Q |
1 |
tgtgaaataaataggaatatttttgaatttaaaaagggggaggaggggaacttgctctaataaagaaaggaaaataaagatattctttgtgctctttact |
100 |
Q |
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| T |
14794645 |
tgtgaaataaataggaatatttttgaatttaaaaagggggaggaggggaacttgctttaataaagaaaggaaaataaagatattctttgtgctctttact |
14794546 |
T |
|
| Q |
101 |
cattgatgagtaatgtgattgctttgtaaggagagaaagtgaaatcttggggcatcaagagacatagtactctcaaggccctatgaaagtgcagcttttg |
200 |
Q |
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| T |
14794545 |
cattgatgagtaatgtgattgctttgtaaggagagaaagtgaaatcttggggcatcaagagacatagtactctcaaggccctatgaaagtgcagcttttg |
14794446 |
T |
|
| Q |
201 |
tttacttggagtgttcccattgataatcatttgaatgagatgttacacactacatacaaaataaggtttatgatatcttgttacttttcttgactaaaat |
300 |
Q |
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| T |
14794445 |
tttacttggagtgttcccattaataatcatttgaatgagatgttacacactacatacaaaataaggtttaagatatcttgttacttttcttgactaaaat |
14794346 |
T |
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| Q |
301 |
tatatgaatggggagacattttctaaagatttaaggcaaatcattctctggtttttagaggatacttatttgaaaacatatatttaaaagt |
391 |
Q |
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| T |
14794345 |
tatatgaatggggagacattttctaaagatttaaggcaaatcattctctggtttttagagaatacttatttgaaaacatatatttaaaagt |
14794255 |
T |
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