View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_high_8 (Length: 360)
Name: NF3257_high_8
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 121 - 342
Target Start/End: Complemental strand, 34573320 - 34573099
Alignment:
| Q |
121 |
gtagtgtttcaatagcatacaccttgatctatatgcagagtaatacttgctaattagcgtaacataatgtgtccaaatcttgagtttgttataaaataga |
220 |
Q |
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| T |
34573320 |
gtagtgtttcaatagcatacaacttgaactatatgcagagtaatacttgctaattagcgtaacataatgtgtccaaatcttgagtttgttataaaataga |
34573221 |
T |
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| Q |
221 |
tttttcagaattagttgaatattgtttaaggtagttacaattacttgatagtttgttatatttattaccttaggatgtgatagttgttacatgtaggtgc |
320 |
Q |
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| T |
34573220 |
tttttcagaattagttgaatattgtttaaggtagttacaattacttgatagtttgttatatttattaccttaggatgtgatagttgttacatgtaggtgc |
34573121 |
T |
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| Q |
321 |
atataaatcatgctttctgtaa |
342 |
Q |
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|||||||||||||||||||||| |
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| T |
34573120 |
atataaatcatgctttctgtaa |
34573099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 34573430 - 34573343
Alignment:
| Q |
18 |
agtaaaagttgattattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
105 |
Q |
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| T |
34573430 |
agtaaaagttgattattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
34573343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 2622032 - 2622063
Alignment:
| Q |
227 |
agaattagttgaatattgtttaaggtagttac |
258 |
Q |
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| T |
2622032 |
agaattagttgaatattgtttaaggtagttac |
2622063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 44565149 - 44565182
Alignment:
| Q |
227 |
agaattagttgaatattgtttaaggtagttacaa |
260 |
Q |
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| T |
44565149 |
agaattagttgaatattatttaaggtagttacaa |
44565182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 45518960 - 45518928
Alignment:
| Q |
225 |
tcagaattagttgaatattgtttaaggtagtta |
257 |
Q |
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| T |
45518960 |
tcagaattagttgaataatgtttaaggtagtta |
45518928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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