View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_16 (Length: 277)
Name: NF3257_low_16
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_16 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 95737 - 95527
Alignment:
| Q |
1 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95737 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
95638 |
T |
|
| Q |
101 |
ttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95637 |
ttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
95538 |
T |
|
| Q |
201 |
accggctcaca |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
95537 |
accggctcaca |
95527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 87721 - 87511
Alignment:
| Q |
1 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87721 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
87622 |
T |
|
| Q |
101 |
ttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
87621 |
ttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattc |
87522 |
T |
|
| Q |
201 |
accggctcaca |
211 |
Q |
| |
|
|| |||||||| |
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| T |
87521 |
acaggctcaca |
87511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 87474 - 87409
Alignment:
| Q |
212 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccac |
277 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccac |
87409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
212 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40870545 - 40870755
Alignment:
| Q |
1 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870545 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
40870644 |
T |
|
| Q |
101 |
ttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870645 |
ttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
40870744 |
T |
|
| Q |
201 |
accggctcaca |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
40870745 |
accggctcaca |
40870755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40878562 - 40878772
Alignment:
| Q |
1 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878562 |
caaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcatagggacaagtctgag |
40878661 |
T |
|
| Q |
101 |
ttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
40878662 |
ttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattc |
40878761 |
T |
|
| Q |
201 |
accggctcaca |
211 |
Q |
| |
|
|| |||||||| |
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|
| T |
40878762 |
acaggctcaca |
40878772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 40878809 - 40878874
Alignment:
| Q |
212 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccac |
277 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccac |
40878874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
212 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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