View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_17 (Length: 253)
Name: NF3257_low_17
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 5770890 - 5770654
Alignment:
| Q |
3 |
gatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctgg |
102 |
Q |
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| T |
5770890 |
gatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagactaattgtggttcatttgttttcgtgtttatacatcaacacatgcctgg |
5770791 |
T |
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| Q |
103 |
tccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttga |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5770790 |
tccatttgttttcattgcttttaggagggagatagaaaaaatattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttga |
5770691 |
T |
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| Q |
203 |
gcatggtaatgttgtaaagttgacttagtttgttgtc |
239 |
Q |
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| T |
5770690 |
gcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 33867159 - 33867395
Alignment:
| Q |
3 |
gatgtatgatctatctttctttcttactctttttnnnnnnntatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctgg |
102 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
33867159 |
gatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagtctaattgtggttcatttgttttcctgtttatacatcaacgcatgcctga |
33867258 |
T |
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| Q |
103 |
tccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttga |
202 |
Q |
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| T |
33867259 |
tccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttga |
33867358 |
T |
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| Q |
203 |
gcatggtaatgttgtaaagttgacttagtttgttgtc |
239 |
Q |
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| T |
33867359 |
gcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
176 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
240 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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